Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00079
         (699 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0680 + 5054306-5056411,5057200-5057243,5057549-5057664,505...    29   4.7  
08_02_1154 - 24727668-24728275,24728503-24728844,24730216-24731119     28   6.2  
08_01_0036 - 267236-268165,268255-268299,268485-268574,269485-26...    28   8.2  

>02_01_0680 +
           5054306-5056411,5057200-5057243,5057549-5057664,
           5057942-5058036
          Length = 786

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -2

Query: 98  HYLIRCHSDSNRPNHILLIDMI 33
           H+L +C S S+RP+ +LL  M+
Sbjct: 107 HFLFKCSSSSSRPHSLLLCTML 128


>08_02_1154 - 24727668-24728275,24728503-24728844,24730216-24731119
          Length = 617

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3

Query: 216 PILMNYQMSNSLNYCPICSHSFSRWVAHLSCR 311
           P L+ + +SNS +YCP  S +     AH SC+
Sbjct: 241 PALLEWVISNSTSYCPRNSSAPECRSAHSSCQ 272


>08_01_0036 - 267236-268165,268255-268299,268485-268574,269485-269805,
            269895-270098,271532-271664,271810-271881,273106-273168,
            273252-275034,275169-275217
          Length = 1229

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 566  CQSVNKNYNVNGHPYCFGFFY 504
            C+  +K + V GHPYC   FY
Sbjct: 1095 CEDDDKRFMVCGHPYCVYKFY 1115


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,993,083
Number of Sequences: 37544
Number of extensions: 325608
Number of successful extensions: 578
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 578
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)