Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00079
         (699 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56230| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_25293| Best HMM Match : DUF1665 (HMM E-Value=0.098)                 29   3.6  
SB_50086| Best HMM Match : DUF1295 (HMM E-Value=1.9e-12)               28   8.4  

>SB_56230| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 996

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +3

Query: 258 CPICSHSFSRWVAHLSCRY 314
           CP+C    S W  H SCRY
Sbjct: 381 CPLCDVDCSYWSLHTSCRY 399


>SB_25293| Best HMM Match : DUF1665 (HMM E-Value=0.098)
          Length = 1450

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
 Frame = -3

Query: 607 FNLEIRSDCFNKWNVNLLTKIIMSMDIHIVLVFFMSR-IHY----NNYIQRKNLDTNRMV 443
           FN ++R D F + N  L+ K  + +  H+ L    SR I+Y    N Y Q  N+   R +
Sbjct: 437 FNTQLRQDAFIRLNGRLMAKYWLKI-THVCLKIVYSRSIYYFIVINTYSQSNNVLNRRKI 495

Query: 442 LI 437
           ++
Sbjct: 496 VL 497


>SB_50086| Best HMM Match : DUF1295 (HMM E-Value=1.9e-12)
          Length = 263

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 12/46 (26%), Positives = 21/46 (45%)
 Frame = -3

Query: 694 RTAKYYSNSICVCHSDILWTI*IISSKFFFNLEIRSDCFNKWNVNL 557
           RT K+Y  +    +  + W   + S KF F   +++ C   W + L
Sbjct: 106 RTEKFYDLAGSATYIFLAWQTLLSSGKFNFRQLVQTGCVTAWGLRL 151


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,549,927
Number of Sequences: 59808
Number of extensions: 407136
Number of successful extensions: 825
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 825
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)