Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00079
         (699 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80025-1|AAD32271.1| 1064|Caenorhabditis elegans Hypothetical pr...    31   1.0  
AC024763-5|AAO12402.1|  716|Caenorhabditis elegans Calpain famil...    28   5.6  
U12965-7|AAY86205.1|  528|Caenorhabditis elegans Hypothetical pr...    28   7.4  
AF003150-4|AAB54217.1|  381|Caenorhabditis elegans Hypothetical ...    28   7.4  
Z69789-2|CAA93651.1|  137|Caenorhabditis elegans Hypothetical pr...    27   9.8  
AL117195-25|CAB55036.1| 1048|Caenorhabditis elegans Hypothetical...    27   9.8  

>U80025-1|AAD32271.1| 1064|Caenorhabditis elegans Hypothetical
           protein F02C9.3 protein.
          Length = 1064

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = -1

Query: 687 RNTILTLYAFVTPIFYGQSKLFLQSFFLIWRFAQIALI 574
           RN    +++FV  + + + K FL  +FLI  F+Q+  I
Sbjct: 99  RNQKYNIFSFVPVVLFQEFKFFLNLYFLIMAFSQLVPI 136


>AC024763-5|AAO12402.1|  716|Caenorhabditis elegans Calpain family
           protein 4, isoform a protein.
          Length = 716

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -1

Query: 186 VSPQYHLL*VCTYKRFNDKHFLDRLYKKLTLSHSL 82
           V P  +++  CT+  ++D  FL R+Y   TL  SL
Sbjct: 681 VPPGQYVIVPCTFDAYDDAEFLLRVYANGTLKSSL 715


>U12965-7|AAY86205.1|  528|Caenorhabditis elegans Hypothetical
           protein F23F12.13 protein.
          Length = 528

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/47 (25%), Positives = 24/47 (51%)
 Frame = -1

Query: 696 TERRNTILTLYAFVTPIFYGQSKLFLQSFFLIWRFAQIALINGMSIC 556
           T   + ++  YA++      + ++FL+SFF  W +A++       IC
Sbjct: 159 TSIASILIVFYAYILEFIEPEQRVFLRSFF-NWGYARLVFTLACFIC 204


>AF003150-4|AAB54217.1|  381|Caenorhabditis elegans Hypothetical
           protein T05E7.5 protein.
          Length = 381

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/26 (50%), Positives = 19/26 (73%)
 Frame = +3

Query: 546 IFVNRLTFHLLKQSERISKLKKNFEE 623
           I VN++T  L+KQ   + ++KKNFEE
Sbjct: 175 INVNKMT--LMKQEMELKRIKKNFEE 198


>Z69789-2|CAA93651.1|  137|Caenorhabditis elegans Hypothetical
           protein F17H10.4 protein.
          Length = 137

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +3

Query: 21  SYSLNHINQQDVVRSITVAMTTNEIVLIFCIICL 122
           S++++ INQ +   S T  + T   V +FC++ L
Sbjct: 19  SFNIDQINQINAFFSSTAGIVTFSAVWLFCVVAL 52


>AL117195-25|CAB55036.1| 1048|Caenorhabditis elegans Hypothetical
           protein Y57A10A.31 protein.
          Length = 1048

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/59 (23%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
 Frame = -3

Query: 619 SKFFFNLEIRSDCFNKWNVNLLTKIIMSMDIHIVLV----FFMSRIHYNNYIQRKNLDT 455
           S  +FN ++  D   K+++ L T ++ +   H+V      +F+ RI   N+ Q +++++
Sbjct: 376 SVLYFNRKMECDPAAKYDITLKTMVLQNFPRHLVTYESREWFVRRIAKENFFQLQSVNS 434


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,695,838
Number of Sequences: 27780
Number of extensions: 324981
Number of successful extensions: 684
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 684
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)