Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00079
         (699 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    24   1.2  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   4.9  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   8.5  
AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...    21   8.5  

>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +3

Query: 54  VVRSITVAMTTNEIVLIFCIICLRN 128
           V  S+ +A+   E++ I C +CL N
Sbjct: 196 VFGSVAIAIAIVELIGIICALCLAN 220


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +3

Query: 567  FHLLKQSERISKLKKNFEE 623
            FH ++++E   KLKK  E+
Sbjct: 1727 FHCMEKNEAAMKLKKRIEK 1745


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = -1

Query: 348 PPGVKWLLEPIDIYNLNAPPTLKMNGSKWDNSLGYLTFDSSLVLDF 211
           PPG    + PI++Y      T+K N +K       L FD  ++L F
Sbjct: 29  PPGEINSINPINVYTKAYIYTIKSNMAK------TLQFDVHMMLQF 68


>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = +3

Query: 582 QSERISKLKKNFEE 623
           QS+R SKLK+N+ +
Sbjct: 23  QSDRYSKLKRNWRK 36


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,010
Number of Sequences: 438
Number of extensions: 4200
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)