Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00079
         (699 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g50780.1 68418.m06291 ATP-binding region, ATPase-like domain-...    30   1.7  
At4g32490.1 68417.m04625 plastocyanin-like domain-containing pro...    29   3.0  
At1g33480.1 68414.m04144 zinc finger (C3HC4-type RING finger) fa...    28   5.2  
At4g19500.1 68417.m02868 disease resistance protein (TIR-NBS-LRR...    27   9.0  
At4g02190.1 68417.m00291 DC1 domain-containing protein contains ...    27   9.0  

>At5g50780.1 68418.m06291 ATP-binding region, ATPase-like
           domain-containing protein low similarity to microrchidia
           [Homo sapiens] GI:5410257; contains Pfam profile
           PF02518: ATPase, histidine kinase-, DNA gyrase B-, and
           HSP90-like domain protein
          Length = 823

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 14/51 (27%), Positives = 25/51 (49%)
 Frame = +3

Query: 222 LMNYQMSNSLNYCPICSHSFSRWVAHLSCRYLWAPVTT*HQAGCELVLPSK 374
           +++Y+  +S  +CPI   S S W  ++     W+P  T  +  C+  L  K
Sbjct: 295 MLDYERRDS-EWCPITRSSVSDWEKNVETVVQWSPYATEEELLCQFNLMKK 344


>At4g32490.1 68417.m04625 plastocyanin-like domain-containing
           protein
          Length = 221

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 7/43 (16%)
 Frame = -2

Query: 218 WILFDS-GFLHLCHRN------TIYFKYVPIRDLMINIS*TDY 111
           W+L  S  + H  HRN      T+YFKYV  +D ++ +S  +Y
Sbjct: 39  WVLTPSEDYSHWSHRNRFQVNDTLYFKYVKGKDSVLEVSEKEY 81


>At1g33480.1 68414.m04144 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 508

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = +3

Query: 222 LMNYQMSNSLNYCPICSHSFSRWVAHLSCRYLWAPVTT*HQAGCELVL-PSKQKK 383
           L +YQ ++ L   P+C H+F     H+ C  LW    T     C L L PS+ ++
Sbjct: 104 LGDYQPNDKLQQIPVCKHTF-----HMDCIDLWLTSHTTCPL-CRLALIPSRSRQ 152


>At4g19500.1 68417.m02868 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein. A false
           intron was added between exons 2 and 3 to circumvent a
           frameshift caused by a sequencing error, as per Blake
           Meyers (bcmeyers@vegmail.ucdavis.edu)
          Length = 1308

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 198 IFALVSPQYHLL*VCTYKRFNDKHF 124
           +F+ +SPQ+HL    TYKR N   +
Sbjct: 224 LFSKLSPQFHLRAFVTYKRTNQDDY 248


>At4g02190.1 68417.m00291 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 659

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 14/62 (22%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = +3

Query: 153 YILKVDGIAVTQVQKSAIE*NPILMNY-QMSNSLNYCPICSHSFSRWVAHLSCRYLWAPV 329
           ++L      + +V K  ++  P+L+ Y + +N + +C IC    +      +C+  WA +
Sbjct: 526 FVLCFKCATLPRVLKHRVDDYPLLLCYGEKANGIYWCEICEKKMNPEKWFYTCKDQWASL 585

Query: 330 TT 335
            T
Sbjct: 586 HT 587


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,458,989
Number of Sequences: 28952
Number of extensions: 290416
Number of successful extensions: 567
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 567
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)