Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00078
(720 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyce... 28 1.2
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po... 27 2.7
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 3.6
SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr... 26 4.7
SPAC10F6.07c |mug94||sequence orphan|Schizosaccharomyces pombe|c... 26 4.7
SPAC23H4.09 |cdb4||curved DNA-binding protein Cdb4|Schizosacchar... 26 6.2
SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein L13/L16|Schiz... 25 8.2
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 25 8.2
SPAC1B3.10c |||SEL1 repeat protein, unknown biological role|Schi... 25 8.2
SPBC839.13c |rpl1601||60S ribosomal protein L13/L16|Schizosaccha... 25 8.2
>SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 568
Score = 28.3 bits (60), Expect = 1.2
Identities = 14/60 (23%), Positives = 31/60 (51%)
Frame = +2
Query: 407 ELPSAGLCLNASKAEASLAESGKDMLTVEPRESGALNNVTLLVAFRIQNARRDVEAHLDR 586
E +A A +AEA E+ K+++ EP+++ A + ++ + +++R V + R
Sbjct: 93 EAAAAARAAAAKEAEAKRLEAAKNIVLKEPKDAPAAKKIAIIDSTNFRDSRVRVNGWVHR 152
>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1396
Score = 27.1 bits (57), Expect = 2.7
Identities = 12/29 (41%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
Frame = -2
Query: 233 LANFVRNDRKSRH-RRIKKQRRYERLAAT 150
LANF+R DR+S H +K++ Y ++A++
Sbjct: 696 LANFIRYDRESVHIPEFQKRKSYSQVASS 724
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 26.6 bits (56), Expect = 3.6
Identities = 18/75 (24%), Positives = 29/75 (38%)
Frame = -1
Query: 534 TSKVTLFRAPDSRGSTVSISLPDSARLASALEAFRHNPADGSSHHRPLGRVHEPNVRNCG 355
+S + ++ S STVS S S+ ++ + PA SSH L +
Sbjct: 356 SSTTSSSKSSSSFSSTVSSSSSTSSSTLTSSSSSSSRPASSSSHSSSLSSHKSSSSSKSS 415
Query: 354 SSRTEQYYYRNDKPS 310
S+ +Y N S
Sbjct: 416 SAPVSSAFYHNSTSS 430
>SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 697
Score = 26.2 bits (55), Expect = 4.7
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = +3
Query: 150 CGSQAFIATLLFDPSMSALPIIANKIRQAL 239
CGS I +LF S S L + KI Q L
Sbjct: 511 CGSSPAIKLILFSKSFSVLQSTSEKIEQLL 540
>SPAC10F6.07c |mug94||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 188
Score = 26.2 bits (55), Expect = 4.7
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = -2
Query: 644 SGLRSRDARVKKKTDSIDLRDPNGLRRRVSRFECETRLVKSHCLELPT 501
+GL S+ K + L NGL + S + C ++ HC+EL T
Sbjct: 99 NGLPSQRCNHDSKLVYMSLVQNNGLPGQRSNYVCCPLCMEQHCIELLT 146
>SPAC23H4.09 |cdb4||curved DNA-binding protein
Cdb4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 381
Score = 25.8 bits (54), Expect = 6.2
Identities = 13/39 (33%), Positives = 24/39 (61%)
Frame = +2
Query: 197 VGSSYHCEQNSPSVGLFTHQRERELGLDRRETG*FYPTD 313
+ +SY C+ P G+ +HQ+ERE+ +D ++ P+D
Sbjct: 175 IATSYGCK---PVAGMLSHQQEREV-IDGKKQVILNPSD 209
>SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein
L13/L16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 197
Score = 25.4 bits (53), Expect = 8.2
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -1
Query: 456 LASALEAFRHNPADGSSHHRPLGRVHEPNVR 364
LA +A R+NP+ G+ H R R+ + VR
Sbjct: 56 LAYLRKACRYNPSRGAFHFRAPSRIFQKAVR 86
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 25.4 bits (53), Expect = 8.2
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = -1
Query: 66 SPYAY*TSGSSQLLPFCSTRGF 1
SPYA+ T S+ L PF STR +
Sbjct: 1211 SPYAFSTVYSNCLNPFISTRSY 1232
>SPAC1B3.10c |||SEL1 repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 680
Score = 25.4 bits (53), Expect = 8.2
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +3
Query: 501 SREL*TM*LY*SRFAFKTR-DATSKPIWIAEIDAIGFFLNTCI 626
SR + + LY +F R ATS I + EID G+F N+ +
Sbjct: 459 SRSMISASLYYKKFVEAIRASATSMAIALEEIDEYGYFHNSFV 501
>SPBC839.13c |rpl1601||60S ribosomal protein
L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 197
Score = 25.4 bits (53), Expect = 8.2
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -1
Query: 456 LASALEAFRHNPADGSSHHRPLGRVHEPNVR 364
LA +A R+NP+ G+ H R R+ + VR
Sbjct: 56 LAYLRKACRYNPSRGAFHFRAPSRIFQKAVR 86
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,009,023
Number of Sequences: 5004
Number of extensions: 60520
Number of successful extensions: 154
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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