Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00078
         (720 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0192 - 28314224-28316287                                         30   2.1  
01_07_0197 + 41912207-41912652,41913226-41913800,41913828-419157...    29   3.7  
03_05_0520 + 25139314-25139364,25139580-25139711,25141594-251417...    29   4.9  
12_01_0941 - 9316051-9316056,9316747-9317082                           28   8.6  
12_01_0935 - 9277421-9277584,9277908-9278111,9280742-9280982,928...    28   8.6  

>05_07_0192 - 28314224-28316287
          Length = 687

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 18/70 (25%), Positives = 33/70 (47%)
 Frame = +2

Query: 374 GSCTRPSGRWCELPSAGLCLNASKAEASLAESGKDMLTVEPRESGALNNVTLLVAFRIQN 553
           G+CT  +G W  LP     +N      S+ ++ +  L++  R+  + N++ +  A     
Sbjct: 338 GACTMKTGHWGLLPVCNALMNMYSKSGSVEDARRVFLSMPCRDVVSWNSIIIGYAHH-GR 396

Query: 554 ARRDVEAHLD 583
           AR  +EA  D
Sbjct: 397 AREAMEAFHD 406


>01_07_0197 +
           41912207-41912652,41913226-41913800,41913828-41915748,
           41915836-41916049,41916143-41916394,41916469-41916528,
           41916646-41916776,41916898-41917012,41917084-41917239
          Length = 1289

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +2

Query: 95  YKEFLARG-ARKVTTGITGLWQPSVHSDVAF*SFDVG 202
           YK F A G  RKV  GIT  + PS+  D+AF S  +G
Sbjct: 633 YKIFQAFGLVRKVEKGITRWYYPSMLDDLAFDSAALG 669


>03_05_0520 +
           25139314-25139364,25139580-25139711,25141594-25141731,
           25143191-25143241,25143662-25143751,25143854-25144000,
           25144108-25144218,25144307-25144375,25144777-25145517,
           25145840-25146004,25146376-25146442,25146580-25146704,
           25148714-25148983,25149065-25149199,25149316-25149497,
           25149669-25149744
          Length = 849

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 28/93 (30%), Positives = 39/93 (41%)
 Frame = +1

Query: 319 VVAIVILLSTRGTAVSDIWFMHSAERPVVRTTIRGIMPERL*GRSQPSRIRQGYAHCGAP 498
           VV   I  ST   +VS    + S  RP+V TT   ++P  +  RS P  I    A   AP
Sbjct: 308 VVPTTISTSTAAVSVS-AETISSPVRPIVPTTTAAVLPASVTARSAPENIP---AVTSAP 363

Query: 499 RVGSSKQCDFTSRVSHSKRETRRRSPFGSRRSM 597
              SS   D  +    S+R +   +  G  R +
Sbjct: 364 ANSSSTLKDDDNMSFPSRRSSPAVTEIGLGRGI 396


>12_01_0941 - 9316051-9316056,9316747-9317082
          Length = 113

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 17/47 (36%), Positives = 26/47 (55%)
 Frame = +2

Query: 452 ASLAESGKDMLTVEPRESGALNNVTLLVAFRIQNARRDVEAHLDRGD 592
           ASLAE     + + P     ++ + +L+AF+ Q AR  +EA LD  D
Sbjct: 24  ASLAEGHPTFVLLRPEIGLNIDKLQILLAFKAQGARL-LEASLDDHD 69


>12_01_0935 -
           9277421-9277584,9277908-9278111,9280742-9280982,
           9282165-9282494
          Length = 312

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 17/47 (36%), Positives = 26/47 (55%)
 Frame = +2

Query: 452 ASLAESGKDMLTVEPRESGALNNVTLLVAFRIQNARRDVEAHLDRGD 592
           ASLAE     + + P     ++ + +L+AF+ Q AR  +EA LD  D
Sbjct: 22  ASLAEGHPTFVLLRPEIGLDIDKLQILLAFKAQGARL-LEASLDDHD 67


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,460,647
Number of Sequences: 37544
Number of extensions: 432190
Number of successful extensions: 1075
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1041
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1075
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)