Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00078
(720 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC114377-1|AAI14378.1| 44|Homo sapiens Unknown (protein for MG... 74 6e-13
BC070050-1|AAH70050.1| 1022|Homo sapiens SRRM2 protein protein. 31 3.1
AF201422-1|AAF21439.1| 2296|Homo sapiens splicing coactivator su... 31 3.1
AB016092-1|BAA83718.1| 2752|Homo sapiens RNA binding protein pro... 31 3.1
AB016088-1|BAA83714.1| 956|Homo sapiens RNA binding protein pro... 31 3.1
AB016087-1|BAA83713.1| 1262|Homo sapiens RNA binding protein pro... 31 3.1
AB002322-1|BAA20782.3| 2800|Homo sapiens KIAA0324 protein protein. 31 3.1
BC048251-1|AAH48251.1| 322|Homo sapiens ZDHHC12 protein protein. 30 7.3
AL441992-6|CAI15406.1| 210|Homo sapiens zinc finger, DHHC-type ... 30 7.3
>BC114377-1|AAI14378.1| 44|Homo sapiens Unknown (protein for
MGC:134704) protein.
Length = 44
Score = 73.7 bits (173), Expect = 6e-13
Identities = 33/37 (89%), Positives = 34/37 (91%)
Frame = -3
Query: 214 MIGRADIEGSKSNVAMNAWLPQASYPCGNFSGTSC*K 104
MIGRADIEGSKS+VAMNAW PQASYPCGNFS TSC K
Sbjct: 1 MIGRADIEGSKSDVAMNAWPPQASYPCGNFSDTSCLK 37
>BC070050-1|AAH70050.1| 1022|Homo sapiens SRRM2 protein protein.
Length = 1022
Score = 31.5 bits (68), Expect = 3.1
Identities = 30/97 (30%), Positives = 42/97 (43%), Gaps = 3/97 (3%)
Frame = +1
Query: 397 PVVRTTIRGIMPERL*GRSQP-SRIRQGYAHCGAPRVGSSKQCDFTSR-VSHSKRETRR- 567
P R R P R GRS+ + R+G + PR G S+ R SHS+ RR
Sbjct: 663 PARRGRSRSRTPARRSGRSRSRTPARRGRSRSRTPRRGRSRSRSLVRRGRSHSRTPQRRG 722
Query: 568 RSPFGSRRSMLSVFFLTRASRLRSPDITQFDVGARNS 678
RS S R S R+ SP++ + + +R S
Sbjct: 723 RSGSSSERKNKSRTSQRRSRSNSSPEMKKSRISSRRS 759
>AF201422-1|AAF21439.1| 2296|Homo sapiens splicing coactivator
subunit SRm300 protein.
Length = 2296
Score = 31.5 bits (68), Expect = 3.1
Identities = 30/97 (30%), Positives = 42/97 (43%), Gaps = 3/97 (3%)
Frame = +1
Query: 397 PVVRTTIRGIMPERL*GRSQP-SRIRQGYAHCGAPRVGSSKQCDFTSR-VSHSKRETRR- 567
P R R P R GRS+ + R+G + PR G S+ R SHS+ RR
Sbjct: 663 PARRGRSRSRTPARRSGRSRSRTPARRGRSRSRTPRRGRSRSRSLVRRGRSHSRTPQRRG 722
Query: 568 RSPFGSRRSMLSVFFLTRASRLRSPDITQFDVGARNS 678
RS S R S R+ SP++ + + +R S
Sbjct: 723 RSGSSSERKNKSRTSQRRSRSNSSPEMKKSRISSRRS 759
>AB016092-1|BAA83718.1| 2752|Homo sapiens RNA binding protein
protein.
Length = 2752
Score = 31.5 bits (68), Expect = 3.1
Identities = 30/97 (30%), Positives = 42/97 (43%), Gaps = 3/97 (3%)
Frame = +1
Query: 397 PVVRTTIRGIMPERL*GRSQP-SRIRQGYAHCGAPRVGSSKQCDFTSR-VSHSKRETRR- 567
P R R P R GRS+ + R+G + PR G S+ R SHS+ RR
Sbjct: 663 PARRGRSRSRTPARRSGRSRSRTPARRGRSRSRTPRRGRSRSRSLVRRGRSHSRTPQRRG 722
Query: 568 RSPFGSRRSMLSVFFLTRASRLRSPDITQFDVGARNS 678
RS S R S R+ SP++ + + +R S
Sbjct: 723 RSGSSSERKNKSRTSQRRSRSNSSPEMKKSRISSRRS 759
>AB016088-1|BAA83714.1| 956|Homo sapiens RNA binding protein
protein.
Length = 956
Score = 31.5 bits (68), Expect = 3.1
Identities = 30/97 (30%), Positives = 42/97 (43%), Gaps = 3/97 (3%)
Frame = +1
Query: 397 PVVRTTIRGIMPERL*GRSQP-SRIRQGYAHCGAPRVGSSKQCDFTSR-VSHSKRETRR- 567
P R R P R GRS+ + R+G + PR G S+ R SHS+ RR
Sbjct: 628 PARRGRSRSRTPARRSGRSRSRTPARRGRSRSRTPRRGRSRSRSLVRRGRSHSRTPQRRG 687
Query: 568 RSPFGSRRSMLSVFFLTRASRLRSPDITQFDVGARNS 678
RS S R S R+ SP++ + + +R S
Sbjct: 688 RSGSSSERKNKSRTSQRRSRSNSSPEMKKSRISSRRS 724
>AB016087-1|BAA83713.1| 1262|Homo sapiens RNA binding protein
protein.
Length = 1262
Score = 31.5 bits (68), Expect = 3.1
Identities = 30/97 (30%), Positives = 42/97 (43%), Gaps = 3/97 (3%)
Frame = +1
Query: 397 PVVRTTIRGIMPERL*GRSQP-SRIRQGYAHCGAPRVGSSKQCDFTSR-VSHSKRETRR- 567
P R R P R GRS+ + R+G + PR G S+ R SHS+ RR
Sbjct: 453 PARRGRSRSRTPARRSGRSRSRTPARRGRSRSRTPRRGRSRSRSLVRRGRSHSRTPQRRG 512
Query: 568 RSPFGSRRSMLSVFFLTRASRLRSPDITQFDVGARNS 678
RS S R S R+ SP++ + + +R S
Sbjct: 513 RSGSSSERKNKSRTSQRRSRSNSSPEMKKSRISSRRS 549
>AB002322-1|BAA20782.3| 2800|Homo sapiens KIAA0324 protein protein.
Length = 2800
Score = 31.5 bits (68), Expect = 3.1
Identities = 30/97 (30%), Positives = 42/97 (43%), Gaps = 3/97 (3%)
Frame = +1
Query: 397 PVVRTTIRGIMPERL*GRSQP-SRIRQGYAHCGAPRVGSSKQCDFTSR-VSHSKRETRR- 567
P R R P R GRS+ + R+G + PR G S+ R SHS+ RR
Sbjct: 711 PARRGRSRSRTPARRSGRSRSRTPARRGRSRSRTPRRGRSRSRSLVRRGRSHSRTPQRRG 770
Query: 568 RSPFGSRRSMLSVFFLTRASRLRSPDITQFDVGARNS 678
RS S R S R+ SP++ + + +R S
Sbjct: 771 RSGSSSERKNKSRTSQRRSRSNSSPEMKKSRISSRRS 807
>BC048251-1|AAH48251.1| 322|Homo sapiens ZDHHC12 protein protein.
Length = 322
Score = 30.3 bits (65), Expect = 7.3
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +3
Query: 435 TPLRPKPA*PNPARICSLWSPESRE 509
TP P P P PA +CS SPE R+
Sbjct: 68 TPTPPTPVLPGPASLCSPASPELRQ 92
>AL441992-6|CAI15406.1| 210|Homo sapiens zinc finger, DHHC-type
containing 12 protein.
Length = 210
Score = 30.3 bits (65), Expect = 7.3
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +3
Query: 435 TPLRPKPA*PNPARICSLWSPESRE 509
TP P P P PA +CS SPE R+
Sbjct: 68 TPTPPTPVLPGPASLCSPASPELRQ 92
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,393,064
Number of Sequences: 237096
Number of extensions: 2319685
Number of successful extensions: 4332
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4328
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8455186714
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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