Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00078
         (720 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF040661-12|AAG24221.1|  210|Caenorhabditis elegans Hypothetical...    29   2.5  
U53337-6|AAA96188.2|  510|Caenorhabditis elegans Acetylcholine r...    29   3.3  
Z70037-4|CAA93877.1|  146|Caenorhabditis elegans Hypothetical pr...    28   7.7  
AF040661-11|AAG24210.1|  211|Caenorhabditis elegans Hypothetical...    28   7.7  

>AF040661-12|AAG24221.1|  210|Caenorhabditis elegans Hypothetical
           protein W10G11.14 protein.
          Length = 210

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 24/84 (28%), Positives = 38/84 (45%)
 Frame = +2

Query: 353 EPQFRTFGSCTRPSGRWCELPSAGLCLNASKAEASLAESGKDMLTVEPRESGALNNVTLL 532
           EP ++ F    RPSG WC    AG     + AE S    G  +  ++  ++ AL   T L
Sbjct: 41  EPGWKFFN---RPSGGWCMRVFAGFNAKKADAEKSCQAVGSTLSGIQ-NKNEALYIQTAL 96

Query: 533 VAFRIQNARRDVEAHLDRGDRCYR 604
           +A +I  +   V   + R  +C +
Sbjct: 97  LA-QIPQSSGSVWIGIQRTQKCLK 119


>U53337-6|AAA96188.2|  510|Caenorhabditis elegans Acetylcholine
           receptor protein 10 protein.
          Length = 510

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/42 (33%), Positives = 25/42 (59%)
 Frame = +1

Query: 535 RVSHSKRETRRRSPFGSRRSMLSVFFLTRASRLRSPDITQFD 660
           R S S++++RRR+    RR ++    + ++  LRS   TQF+
Sbjct: 378 RTSSSRQKSRRRNSKSQRRPLVLTKNVNKSHSLRSRRFTQFE 419


>Z70037-4|CAA93877.1|  146|Caenorhabditis elegans Hypothetical
           protein T27D12.3 protein.
          Length = 146

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +2

Query: 386 RPSGRWCELPSAGLCLNASKAEASLAESGKDMLTVEPRESGALNNVT 526
           RPSG WC     GL L  ++ EAS   + +  +    +    LN +T
Sbjct: 35  RPSGPWCVKLFVGLYLQGNRNEASARCAAEGAVLSGVQNQAELNAMT 81


>AF040661-11|AAG24210.1|  211|Caenorhabditis elegans Hypothetical
           protein W10G11.15 protein.
          Length = 211

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 21/73 (28%), Positives = 31/73 (42%)
 Frame = +2

Query: 386 RPSGRWCELPSAGLCLNASKAEASLAESGKDMLTVEPRESGALNNVTLLVAFRIQNARRD 565
           RPSG WC     G     + AE S    G  +  ++ R   AL   T L+A +I  +   
Sbjct: 49  RPSGGWCMRVFEGFNAAKTDAEKSCKSVGSTLSGIQNRNE-ALYIQTALLA-QIARSSGS 106

Query: 566 VEAHLDRGDRCYR 604
           V   + R  +C +
Sbjct: 107 VWVGMQRTQKCLK 119


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,841,432
Number of Sequences: 27780
Number of extensions: 347290
Number of successful extensions: 919
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 888
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 919
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)