Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00078
         (720 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g16180.1 68416.m02043 proton-dependent oligopeptide transport...    30   1.3  
At3g52160.1 68416.m05726 beta-ketoacyl-CoA synthase family prote...    29   4.1  
At4g26190.1 68417.m03770 expressed protein                             28   5.4  
At4g29310.1 68417.m04190 expressed protein                             27   9.5  
At1g54610.1 68414.m06228 protein kinase family protein contains ...    27   9.5  

>At3g16180.1 68416.m02043 proton-dependent oligopeptide transport
           (POT) family protein contains Pfam profile: PF00854 POT
           family
          Length = 591

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = +3

Query: 156 SQAFIATLLFDPSMSALPIIANKIRQALDCSPIKGNVSWV 275
           S + IA  LF   M+   I+A+ I  A+  S  +GNVSW+
Sbjct: 492 SMSSIAASLFGLGMAVANILASVILNAVKNSSKQGNVSWI 531


>At3g52160.1 68416.m05726 beta-ketoacyl-CoA synthase family protein
           beta-ketoacyl-CoA synthase - Simmondsia
           chinensis,PID:g1045614
          Length = 451

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +3

Query: 21  RAKAGLIQMFSTHRDCESTAYRSFSIK 101
           RAK  L+Q+  TH+  E T+Y+S  ++
Sbjct: 291 RAKYQLMQLVRTHKGMEDTSYKSIELR 317


>At4g26190.1 68417.m03770 expressed protein
          Length = 1067

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = +3

Query: 546  FKTRDATSKPIWIAEIDAIGFFLNTCITAPKSGYN 650
            FKT++   KP+++ ++  +   + TCI+  K  Y+
Sbjct: 944  FKTQEKKDKPLFLKDLRRVWDHIGTCISCGKRKYD 978


>At4g29310.1 68417.m04190 expressed protein
          Length = 424

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = -3

Query: 196 IEGSKSNVAMNAWLPQASYPCGNFSGTSC*KLFILKDR*AVLSQSLCVLNIWIK 35
           I G K ++ ++ +  +  + CG  SG    K+ +  D  A LS+++   N W K
Sbjct: 85  ISGKKISLRVSVYAGRTGHTCGVASGKLLGKVEVAVDLAAALSRTVAFHNGWKK 138


>At1g54610.1 68414.m06228 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain
          Length = 572

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 17/52 (32%), Positives = 26/52 (50%)
 Frame = +1

Query: 418 RGIMPERL*GRSQPSRIRQGYAHCGAPRVGSSKQCDFTSRVSHSKRETRRRS 573
           R IMP    GR++  ++ + Y  CG+P     K+  FT    +  RE  +RS
Sbjct: 316 RPIMP----GRTEVEQLHKIYKLCGSPSEDYWKKGKFTHGAIYKPREPYKRS 363


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,066,147
Number of Sequences: 28952
Number of extensions: 332115
Number of successful extensions: 766
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 749
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 766
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1565336320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)