Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00077
         (751 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF...    30   0.31 
SPAC139.06 |hat1|SPAC23C4.01|histone acetyltransferase Hat1|Schi...    26   5.0  
SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein Pkl1|S...    26   5.0  
SPAC2F3.01 ||SPAC323.09|mannosyltransferase complex subunit |Sch...    26   5.0  
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|...    25   8.7  

>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
           eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 918

 Score = 30.3 bits (65), Expect = 0.31
 Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
 Frame = +3

Query: 564 KDNIFYECDSKYVKVLLKGFQEPIEFVGIAKNSGKA----IAVDGIG-RVILAATDGL 722
           K+N  ++ D    +   +GF +P E   I K +GKA    + VDG+  R I+A T+GL
Sbjct: 265 KNNRQFQSDIDRYRKDPEGFMKPAELNEIPKPAGKAGQDEVIVDGVATRGIVAPTEGL 322


>SPAC139.06 |hat1|SPAC23C4.01|histone acetyltransferase
           Hat1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 378

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
 Frame = -3

Query: 698 HSPNSIYSYSFSGILSDTNKFNGLLKAFE--QNFNIFGITFVK 576
           HS NSI++YSF+G      +   +L+A E  Q+  IF + F++
Sbjct: 108 HSANSIHNYSFNGKTFKILQAT-VLEASEIMQHLQIFSLFFIE 149


>SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein
           Pkl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +1

Query: 262 FERGIRSKSITLEVKLQRLDMKRNKV 339
           +E  I S  I LE KL  +DM RNK+
Sbjct: 378 YEEKISSLRIELEDKLAEIDMLRNKL 403


>SPAC2F3.01 ||SPAC323.09|mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 319

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 9/12 (75%), Positives = 11/12 (91%)
 Frame = +3

Query: 216 NTSRRQHPDKNG 251
           N+ RRQHPD+NG
Sbjct: 86  NSCRRQHPDENG 97


>SPAC3A12.05c |taf2||TATA-binding protein associated factor
            Taf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1174

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +1

Query: 595  NMLKFCSKAFKSPLNLLVSLRIP 663
            N+L  C   +K+  +LLV+L+IP
Sbjct: 1084 NLLMICRVLYKAKSSLLVTLKIP 1106


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,223,448
Number of Sequences: 5004
Number of extensions: 70348
Number of successful extensions: 212
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 212
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)