Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00077
(751 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0542 + 3975500-3975546,3976273-3976370,3976694-3976830,397... 34 0.10
05_02_0128 - 6890918-6891900,6892929-6893124 34 0.14
05_02_0131 - 6919143-6920125,6920334-6920529 33 0.32
07_01_0018 + 121378-122130 32 0.56
11_06_0295 + 22033367-22034947,22035030-22035137,22035230-220353... 30 2.3
03_01_0056 - 471338-471919,472013-472213 29 3.9
11_06_0561 - 24984960-24985205,24985283-24985354,24985906-249859... 29 5.2
12_02_1122 - 26244667-26245299 28 9.1
01_01_0699 + 5405178-5405356,5405478-5405693,5405808-5405919,540... 28 9.1
>01_01_0542 +
3975500-3975546,3976273-3976370,3976694-3976830,
3977518-3977871,3977953-3978041,3978502-3978589,
3978659-3978734,3978858-3978907,3979032-3979340,
3979803-3979982,3980086-3980325,3980471-3980582,
3980931-3981040,3981162-3981311,3981777-3981932,
3982289-3982405,3982759-3982839,3983338-3983478
Length = 844
Score = 34.3 bits (75), Expect = 0.10
Identities = 27/67 (40%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Frame = +1
Query: 316 LDMKRNKV-YIASDDGLNELN--STDKANFVGLKDDDIVQL-YKPRHGDELYAVLFPENA 483
LD NK I S DG NE+ S + N V + QL ++PRHG Y + ENA
Sbjct: 698 LDFHPNKDDLICSCDGDNEIRFWSINNGNIVRIFKGGSSQLRFQPRHGG--YLAVASENA 755
Query: 484 VYIIDIE 504
V I+D+E
Sbjct: 756 VSILDVE 762
>05_02_0128 - 6890918-6891900,6892929-6893124
Length = 392
Score = 33.9 bits (74), Expect = 0.14
Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Frame = +1
Query: 112 HPYSRTAILSI-KGLPTNLVYNPANQDLLFTLIDLETLQDDNIQTKMDHIYFERGIRSKS 288
H A+L+I PTN+VY D F L + E L + ++ KM I GI +
Sbjct: 18 HAEGPAAVLAIGTANPTNIVYQDGFTDYYFGLTESEHLTE--LKDKMKRICHRSGIEKRY 75
Query: 289 ITLEVKLQR 315
I L+ KL R
Sbjct: 76 IHLDEKLIR 84
>05_02_0131 - 6919143-6920125,6920334-6920529
Length = 392
Score = 32.7 bits (71), Expect = 0.32
Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Frame = +1
Query: 112 HPYSRTAILSI-KGLPTNLVYNPANQDLLFTLIDLETLQDDNIQTKMDHIYFERGIRSKS 288
H A+L+I PTN+VY D F L E L + ++ KM I GI +
Sbjct: 18 HAEGPAAVLAIGTANPTNIVYQDGFADYYFGLTKSEHLTE--LKDKMKRICHRSGIEKRY 75
Query: 289 ITLEVKLQR 315
I L+ KL R
Sbjct: 76 IHLDEKLIR 84
>07_01_0018 + 121378-122130
Length = 250
Score = 31.9 bits (69), Expect = 0.56
Identities = 17/57 (29%), Positives = 28/57 (49%)
Frame = -3
Query: 695 SPNSIYSYSFSGILSDTNKFNGLLKAFEQNFNIFGITFVKYIIFVIYAQIESAGNVF 525
SP +YS +F G + T+ G+L +F +F T +KY+ + A + G F
Sbjct: 80 SPLYVYSTTFDGGIRHTDDLLGVLSLIIYSFLLF--TIIKYVYIALRANDDGDGGTF 134
>11_06_0295 +
22033367-22034947,22035030-22035137,22035230-22035370,
22035576-22035625,22036100-22036168,22036649-22036781,
22037634-22037747,22037826-22038038,22038387-22038500,
22038768-22038900,22039304-22039416,22040204-22040284,
22040397-22040483
Length = 978
Score = 29.9 bits (64), Expect = 2.3
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = -1
Query: 163 NLLVGL*WIIWLFLSKDDHRNRRSSSWMPQLRPQ 62
NLL G I L+LS D H RSS + ++PQ
Sbjct: 635 NLLTGKKRFILLYLSSDFHAENRSSGTIVDMKPQ 668
>03_01_0056 - 471338-471919,472013-472213
Length = 260
Score = 29.1 bits (62), Expect = 3.9
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 4/37 (10%)
Frame = +1
Query: 457 YAVLF-PENAVYIID---IEKTKRGKSNTFPALSIWA 555
YA+L+ P++ V+++D + + R NTFP +WA
Sbjct: 130 YAILWNPDHIVFLVDDVPVRRYPRAAGNTFPDRQMWA 166
>11_06_0561 - 24984960-24985205,24985283-24985354,24985906-24985977,
24986612-24986782,24987464-24987653,24987733-24987976,
24988162-24988474,24988687-24989517,24989628-24989672,
24989677-24989790,24989877-24990371,24990627-24990824,
24990902-24991357
Length = 1148
Score = 28.7 bits (61), Expect = 5.2
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +3
Query: 636 EFVGIAKNSGKAIAVDGIGRVILAATDGLYHL 731
E V I + GK +DG+GRV + GLY +
Sbjct: 1113 EHVMIQNSEGKRFGIDGLGRVDKLSFRGLYQI 1144
>12_02_1122 - 26244667-26245299
Length = 210
Score = 27.9 bits (59), Expect = 9.1
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = -1
Query: 724 YKPS-VAANITLPIPSTAIAFPEFLAIPTNSMGS 626
Y P+ VAA T +TA+A P+ + +PT+ M S
Sbjct: 108 YLPAGVAAATTTTTTTTAMAVPDMVGMPTHQMSS 141
>01_01_0699 +
5405178-5405356,5405478-5405693,5405808-5405919,
5406335-5406397,5406468-5406606,5406822-5406877,
5408088-5408161,5408270-5408417,5408505-5408678,
5408809-5408896,5408996-5409109,5409728-5409825,
5409927-5410017,5410440-5410534,5410672-5410825,
5410864-5410876,5411276-5411384
Length = 640
Score = 27.9 bits (59), Expect = 9.1
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -3
Query: 608 NFNIFGITFVKYIIFVIYAQIESAGNVFDFPLFVFS 501
+F+ FGI ++ + IE AG +F +PL V S
Sbjct: 177 HFSKFGIPLPDFVEVDTLSSIEKAGEMFGYPLMVKS 212
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,225,389
Number of Sequences: 37544
Number of extensions: 418476
Number of successful extensions: 1254
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1254
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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