Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00077
(751 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_37182| Best HMM Match : DUF225 (HMM E-Value=1) 33 0.33
SB_15054| Best HMM Match : Keratin_B2 (HMM E-Value=6.3) 31 1.3
SB_54557| Best HMM Match : PHK_AB (HMM E-Value=0) 30 1.7
SB_35757| Best HMM Match : Extensin_2 (HMM E-Value=4.7) 29 3.0
SB_39021| Best HMM Match : M (HMM E-Value=5.3e-06) 29 3.0
SB_44315| Best HMM Match : M (HMM E-Value=2.2e-10) 29 4.0
SB_42647| Best HMM Match : DEAD (HMM E-Value=0.016) 29 4.0
SB_53562| Best HMM Match : Exo_endo_phos (HMM E-Value=0.018) 29 5.3
SB_11402| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3
SB_11327| Best HMM Match : Upf2 (HMM E-Value=5.9) 28 7.0
SB_486| Best HMM Match : Toxin_3 (HMM E-Value=4.5) 28 9.3
SB_51248| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3
>SB_37182| Best HMM Match : DUF225 (HMM E-Value=1)
Length = 1282
Score = 32.7 bits (71), Expect = 0.33
Identities = 18/55 (32%), Positives = 25/55 (45%)
Frame = -1
Query: 376 CLVRLVRHRWLCTLCFVSYPAAEA*PLTLSILIVFPSRSIYGPFLSGCCRLEVFP 212
C R V H L ++CF S + P+T S V P R + C ++VFP
Sbjct: 759 CSCRCVPHHVLMSMCFPSRAHVDVFPITCSCRCV-PHRVLMSMCSPSCAHVDVFP 812
Score = 30.7 bits (66), Expect = 1.3
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = -1
Query: 376 CLVRLVRHRWLCTLCFVSYPAAEA*PLTLSILIVFPSRSIYGPFLSGCCRLEVFP 212
C R V HR L ++CF S + P+T S V P+R + ++VFP
Sbjct: 992 CSCRCVPHRVLMSMCFPSRAHVDVFPITCSCRCV-PNRVLMSMCFQSRNHVDVFP 1045
Score = 27.9 bits (59), Expect = 9.3
Identities = 17/55 (30%), Positives = 23/55 (41%)
Frame = -1
Query: 376 CLVRLVRHRWLCTLCFVSYPAAEA*PLTLSILIVFPSRSIYGPFLSGCCRLEVFP 212
C R V H L ++C S P+T S V P R + F ++VFP
Sbjct: 498 CSCRCVSHHVLMSMCSTSRAHVNVFPITCSCRCV-PHRVLMSIFSPSRAHVDVFP 551
Score = 27.9 bits (59), Expect = 9.3
Identities = 16/55 (29%), Positives = 23/55 (41%)
Frame = -1
Query: 376 CLVRLVRHRWLCTLCFVSYPAAEA*PLTLSILIVFPSRSIYGPFLSGCCRLEVFP 212
C R V H L ++CF S + P+ S V P + C ++VFP
Sbjct: 563 CSCRCVHHHVLKSMCFPSRAHVDVFPIACSCRCV-PHYLLMSMCSPSCAHVDVFP 616
Score = 27.9 bits (59), Expect = 9.3
Identities = 17/55 (30%), Positives = 25/55 (45%)
Frame = -1
Query: 376 CLVRLVRHRWLCTLCFVSYPAAEA*PLTLSILIVFPSRSIYGPFLSGCCRLEVFP 212
C R V H L ++CF S + P+T S V P+R + ++VFP
Sbjct: 908 CSCRCVPHSVLMSMCFPSRAHVDMFPITCSCRCV-PNRVLMSMCFQSRNHVDVFP 961
>SB_15054| Best HMM Match : Keratin_B2 (HMM E-Value=6.3)
Length = 222
Score = 30.7 bits (66), Expect = 1.3
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = -1
Query: 376 CLVRLVRHRWLCTLCFVSYPAAEA*PLTLSILIVFPSRSIYGPFLSGCCRLEVFP 212
C R V HR L ++CF S + P+T S V P+R + ++VFP
Sbjct: 74 CSCRCVPHRVLMSMCFPSRAHVDVFPITCSCRCV-PNRVLMSMCFQSRNHVDVFP 127
>SB_54557| Best HMM Match : PHK_AB (HMM E-Value=0)
Length = 863
Score = 30.3 bits (65), Expect = 1.7
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 9/57 (15%)
Frame = +3
Query: 477 KRCLHNRHRKN-EKRKVEYI-------PCAF-YLGVDDKDNIFYECDSKYVKVLLKG 620
K L +++RK EKR++EY P F YL +D + YEC + YVK+L G
Sbjct: 185 KCVLEDKNRKYYEKRELEYFHGIENEWPIFFAYLAIDARFRHDYECANHYVKLLQDG 241
>SB_35757| Best HMM Match : Extensin_2 (HMM E-Value=4.7)
Length = 211
Score = 29.5 bits (63), Expect = 3.0
Identities = 20/86 (23%), Positives = 41/86 (47%)
Frame = -3
Query: 707 SQYHSPNSIYSYSFSGILSDTNKFNGLLKAFEQNFNIFGITFVKYIIFVIYAQIESAGNV 528
S Y+SP S+Y+ S S + +N + + +++ YI + + S +V
Sbjct: 63 SVYNSPISVYNLPISVYNSPISVYNSPISVYNSPISVYNSPISVYISSI--SVYNSPISV 120
Query: 527 FDFPLFVFSMSIM*TAFSGNKTAYNS 450
++ P+ V+ SI + ++ + YNS
Sbjct: 121 YNSPISVYISSI--SVYNSPISVYNS 144
>SB_39021| Best HMM Match : M (HMM E-Value=5.3e-06)
Length = 1691
Score = 29.5 bits (63), Expect = 3.0
Identities = 20/55 (36%), Positives = 26/55 (47%)
Frame = +1
Query: 277 RSKSITLEVKLQRLDMKRNKVYIASDDGLNELNSTDKANFVGLKDDDIVQLYKPR 441
R K+ LE K Q L K+ + L ELNS K N V KD + + +PR
Sbjct: 431 RDKNKRLEKKNQELTQNSRKLETKNKLLLEELNSLKKKNSVSSKDVGMRKGVRPR 485
>SB_44315| Best HMM Match : M (HMM E-Value=2.2e-10)
Length = 2155
Score = 29.1 bits (62), Expect = 4.0
Identities = 24/98 (24%), Positives = 51/98 (52%), Gaps = 3/98 (3%)
Frame = +1
Query: 235 IQTKMDHIYFERGIRSKSITLEVKLQRLDMKRNKVYIASDDGLNELNSTDKANFVGLKDD 414
++ + D + R++ T+E K+Q +D +R V + + LNE +S D+ + L +
Sbjct: 346 LRAEKDSLVSNLDTRAEGSTIEEKIQAMDTER-MVAASPGEYLNEAHSQDEIERLKL-EL 403
Query: 415 DIVQLYKPR---HGDELYAVLFPENAVYIIDIEKTKRG 519
++VQ K + D + ++ EN++ + D+ + RG
Sbjct: 404 EVVQREKEQILEEKDRIREIVKEENSM-VSDLTENIRG 440
>SB_42647| Best HMM Match : DEAD (HMM E-Value=0.016)
Length = 187
Score = 29.1 bits (62), Expect = 4.0
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +3
Query: 459 RCFVSRKRCLHNRHRK-NEKRKVEYIPCAFYLGVDDKDNIFYECDSKYVK 605
RC +R LH++H+K EKR Y P G+ N++ C ++
Sbjct: 9 RCVDDPRRVLHSKHQKLYEKRSKTYNPSPPPFGIRLYTNVYVICSRDVIQ 58
>SB_53562| Best HMM Match : Exo_endo_phos (HMM E-Value=0.018)
Length = 721
Score = 28.7 bits (61), Expect = 5.3
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = +2
Query: 5 SVPPQERDHILKCFNSSSYLWSQLRHPRTAPSISMVIL--TQEQPYYPLKAYQQIW 166
++P + DH+ S LW QLR R S+S ++L P+ YQ+++
Sbjct: 191 AIPSRRLDHLEPTGLLSEVLWLQLRPIRLPRSVSSIVLGVIYHPPHAKADDYQKLY 246
>SB_11402| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 753
Score = 28.7 bits (61), Expect = 5.3
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = +1
Query: 280 SKSITLEVKLQRLDMKRNKVYIASDDGLNELNSTDKANFVGLKDDDIVQLYK 435
S +T E + RL+ RNK++ A + + TDK +V D YK
Sbjct: 259 SNDLTKEANMCRLNKYRNKIFEARGRVILSQHGTDKGEYVQEVAGDAQSTYK 310
>SB_11327| Best HMM Match : Upf2 (HMM E-Value=5.9)
Length = 564
Score = 28.3 bits (60), Expect = 7.0
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +1
Query: 331 NKVYIASDDGLNELNSTDKANFVGLKDDDIV 423
+ V A+DD NE+N+TD N V DD++V
Sbjct: 306 DNVVDATDDD-NEVNATDDDNVVNAADDNVV 335
>SB_486| Best HMM Match : Toxin_3 (HMM E-Value=4.5)
Length = 334
Score = 27.9 bits (59), Expect = 9.3
Identities = 17/55 (30%), Positives = 24/55 (43%)
Frame = -1
Query: 376 CLVRLVRHRWLCTLCFVSYPAAEA*PLTLSILIVFPSRSIYGPFLSGCCRLEVFP 212
C R V H L ++CF S + P+T S V P + C ++VFP
Sbjct: 166 CSCRCVPHNVLMSMCFPSRAHVDVAPITCSCRCV-PHYMLMLMCSPSCAYVDVFP 219
>SB_51248| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1004
Score = 27.9 bits (59), Expect = 9.3
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +2
Query: 32 ILKCFNSSSYLWSQLRHPRTAPSISMVILTQEQPYYPLK 148
+LK F S Y++ Q +P+ +I VI+ + P P+K
Sbjct: 478 VLKRFCSQFYIYLQDDYPKWGRNIEKVIIKPQLPSLPIK 516
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,674,863
Number of Sequences: 59808
Number of extensions: 499066
Number of successful extensions: 1481
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1454
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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