Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00077
         (751 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    23   2.3  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    23   3.1  

>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -3

Query: 581 VKYIIFVIYAQIESAGNVFDFPLFVFSMS 495
           +KYI F  +  IE   NV DF  + +  S
Sbjct: 7   IKYINFDRFFFIEGMTNVLDFDYYFYDYS 35


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +1

Query: 592 PNMLKFCSKAFKSPLNLLVSLRIPEK 669
           P   ++CSK+F    NL V  RI  K
Sbjct: 119 PYQCEYCSKSFSVKENLSVHRRIHTK 144



 Score = 21.8 bits (44), Expect = 7.1
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = -1

Query: 505 FLCRLCKQRFLETKQRTIHLR 443
           ++C+ C + F  +KQ  +H R
Sbjct: 204 YVCKACGKGFTCSKQLKVHTR 224


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,405
Number of Sequences: 438
Number of extensions: 5039
Number of successful extensions: 6
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)