Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00077
         (751 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g05080.1 68417.m00754 F-box family protein contains Pfam PF00...    31   0.82 
At5g01150.1 68418.m00019 hypothetical protein contains Pfam prof...    29   3.3  
At4g23640.1 68417.m03404 potassium transporter / tiny root hair ...    29   4.4  
At3g13235.1 68416.m01666 ubiquitin family protein contains INTER...    28   5.8  

>At4g05080.1 68417.m00754 F-box family protein contains Pfam
           PF00646: F-box domain; contains TIGRFAM TIGR01640 :
           F-box protein interaction domain
          Length = 391

 Score = 31.1 bits (67), Expect = 0.82
 Identities = 14/52 (26%), Positives = 28/52 (53%)
 Frame = -2

Query: 594 WNHIRKIYYLCHLRPNRKRRECIRLSSFRFFYVDYVNSVFWKQNSVQFISVS 439
           WN + K   LC  +P ++  +   LS +R   + +  S  +K+N  +F+++S
Sbjct: 34  WNALSKDRILCKAKPKQQFHQGFMLSDYRLRSMRFNISGTFKENGEEFVNLS 85


>At5g01150.1 68418.m00019 hypothetical protein contains Pfam profile
           PF05056: Protein of unknown function (DUF674)
          Length = 501

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 19/78 (24%), Positives = 37/78 (47%)
 Frame = +3

Query: 465 FVSRKRCLHNRHRKNEKRKVEYIPCAFYLGVDDKDNIFYECDSKYVKVLLKGFQEPIEFV 644
           + S+  CL  +  + E  KV  +    ++   D   +F EC  ++V++L      P+E  
Sbjct: 244 YKSQSPCLEKKEDEAEPEKV--VTLKAFVRKQDMKILFVECGEEFVELLFSFIAVPLE-- 299

Query: 645 GIAKNSGKAIAVDGIGRV 698
              + SG +I++  IG +
Sbjct: 300 SAWEISGSSISLGCIGNM 317


>At4g23640.1 68417.m03404 potassium transporter / tiny root hair 1
           protein (TRH1) identical to tiny root hair 1 protein
           [Arabidopsis thaliana] gi|11181958|emb|CAC16137;
           KUP/HAK/KT Transporter family member, PMID:11500563;
           identical to cDNA mRNA for tiny root hair 1 protein
           (trh1) GI:11181957
          Length = 775

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = -3

Query: 695 SPNSIYSYSFSGILSDTNKFNGLLKAFEQNF-NIFGITFVKYIIFVIYAQIESAGNVF 525
           SP  +Y  +F G L      + +  AF   F  I  ++ +KY++FV+ A     G +F
Sbjct: 29  SPLYVYKCTFYGGLRHHQTEDTIFGAFSLIFWTITLLSLIKYMVFVLSADDNGEGGIF 86


>At3g13235.1 68416.m01666 ubiquitin family protein contains
           INTERPRO:IPR000626 ubiquitin domain
          Length = 414

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 9/22 (40%), Positives = 18/22 (81%)
 Frame = +1

Query: 364 NELNSTDKANFVGLKDDDIVQL 429
           NE+ ++DK + +G+KDDD++ +
Sbjct: 48  NEMGNSDKLSALGVKDDDLLMM 69


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,639,185
Number of Sequences: 28952
Number of extensions: 354993
Number of successful extensions: 1141
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1140
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)