Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00076
         (791 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory recept...    23   3.7  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    22   4.9  
U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    21   8.5  
EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D pro...    21   8.5  

>AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory receptor
           candidate 36 protein.
          Length = 355

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 8/31 (25%), Positives = 18/31 (58%)
 Frame = +3

Query: 501 GVRVNSVDDLTEDALGFAGLVYEHVLGEDKF 593
           G+  +++D +   A+ F G+    +L +DK+
Sbjct: 74  GITTDTIDRVFTVAIPFVGIANSCILNQDKW 104


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 9/19 (47%), Positives = 12/19 (63%), Gaps = 2/19 (10%)
 Frame = -2

Query: 619 GFL--HCSTKVNLSSPSTC 569
           GF+  HC +KVN  + S C
Sbjct: 329 GFMGRHCESKVNFCATSPC 347


>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -2

Query: 511 TRTPRTLGLDVPY 473
           T+ P  LGLD PY
Sbjct: 205 TQLPLNLGLDFPY 217


>EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D
           protein.
          Length = 255

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +2

Query: 113 TATETVLVKGLVMDHGARHPDMPKRVE 193
           TATE + + GL+ +      D P+ V+
Sbjct: 122 TATEQLCIGGLLYNERTHSCDWPENVD 148


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,724
Number of Sequences: 336
Number of extensions: 3781
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21480183
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)