Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00076
(791 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit C... 123 3e-29
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu... 64 2e-11
SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit... 62 9e-11
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ... 48 2e-06
SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni... 47 3e-06
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 30 0.44
SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr 2|... 27 4.1
SPAC15A10.13 |ppk3||serine/threonine protein kinase Ppk3|Schizos... 27 4.1
SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory sub... 27 4.1
SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ... 27 4.1
SPAC4G9.11c |cmb1||cytosine-mismatch binding protein 1|Schizosac... 26 5.4
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 26 7.1
SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M... 26 7.1
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 26 7.1
SPAC57A10.06 |mug15||sequence orphan|Schizosaccharomyces pombe|c... 26 7.1
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 25 9.4
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 25 9.4
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C... 25 9.4
>SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit
Cct6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 123 bits (297), Expect = 3e-29
Identities = 53/83 (63%), Positives = 73/83 (87%)
Frame = +2
Query: 5 LADVLTDACVDAVLTIRTPGKPVDLHMVEIMEMKHKTATETVLVKGLVMDHGARHPDMPK 184
+ + L A VDA+LTIR P +P+DLHMVEIM+M++++A++T L++GL++DHGARHPDMPK
Sbjct: 162 VVESLAPAVVDAILTIRRPDEPIDLHMVEIMKMQNRSASDTQLIRGLLLDHGARHPDMPK 221
Query: 185 RVENAYILTCNVSLEYEKTEVNS 253
+V+NAYIL NVSLEYEK+E+NS
Sbjct: 222 QVKNAYILILNVSLEYEKSEINS 244
Score = 122 bits (294), Expect = 6e-29
Identities = 55/87 (63%), Positives = 68/87 (78%)
Frame = +3
Query: 501 GVRVNSVDDLTEDALGFAGLVYEHVLGEDKFTFVEQCKNPQSVTILIKGPNKHTLTQIKD 680
GV NSVDDL + LG+AG VYE LGE+K+TFVE K+P+S TILI GPN +T+ QI+D
Sbjct: 329 GVAQNSVDDLNPEVLGWAGSVYERTLGEEKYTFVEDVKDPKSATILIHGPNTYTIQQIQD 388
Query: 681 AVRDGLRAINNAIEDKCVIPGAAAFEI 761
A RDGLRA+ NA+ED C+I GA AFE+
Sbjct: 389 ATRDGLRAVKNAVEDNCLIVGAGAFEV 415
Score = 118 bits (284), Expect = 1e-27
Identities = 57/85 (67%), Positives = 70/85 (82%), Gaps = 2/85 (2%)
Frame = +1
Query: 256 FFYKSAEDREKLVAAEREFIDQRVRKIVALKKKLCDGTDKT--FVVINQKGIDPLSLDAF 429
FFY ++E RE+LV +ER+F+D ++RKIV LKK++C+ D T FV+INQKGIDPLSLD
Sbjct: 246 FFYSTSEQRERLVESERKFVDNKLRKIVELKKEVCE-RDPTANFVIINQKGIDPLSLDVL 304
Query: 430 AKEGIIGLRRAKRRNMERLALACGG 504
AK GI+ LRRAKRRNMERL LACGG
Sbjct: 305 AKNGIMALRRAKRRNMERLQLACGG 329
>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
Cct5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 546
Score = 64.1 bits (149), Expect = 2e-11
Identities = 34/92 (36%), Positives = 50/92 (54%), Gaps = 2/92 (2%)
Frame = +3
Query: 492 SVRGVRVNSVDDLTEDALGFAGLVYEHVLG--EDKFTFVEQCKNPQSVTILIKGPNKHTL 665
+ G V +DL+ D LG AG+V E G DK +E+C N ++VT+ ++G NK +
Sbjct: 338 ATNGRIVPRFEDLSSDKLGSAGIVREVSFGTTRDKILVIEKCANSRAVTVFVRGSNKMIV 397
Query: 666 TQIKDAVRDGLRAINNAIEDKCVIPGAAAFEI 761
+ K A+ D L + N I D V+ G A EI
Sbjct: 398 DEAKRALHDALCVVRNLIRDNRVVYGGGAAEI 429
Score = 49.6 bits (113), Expect = 5e-07
Identities = 30/81 (37%), Positives = 43/81 (53%), Gaps = 3/81 (3%)
Frame = +2
Query: 11 DVLTDACVDAVLTIRT-PGKPVDLHMVEIMEMKHKTATETVLVKGLVMDHGARHPDMPKR 187
D + VDAVL++ K VD ++++ + +T LVKG+V+D HP MP R
Sbjct: 185 DHFANIAVDAVLSVADLQRKDVDFELIKVDGKVGGSVDDTKLVKGVVVDKDMSHPQMPHR 244
Query: 188 VENA--YILTCNVSLEYEKTE 244
+ENA ILTC KT+
Sbjct: 245 IENAKIAILTCPFEPPKPKTK 265
>SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit
Cct3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 528
Score = 62.1 bits (144), Expect = 9e-11
Identities = 29/88 (32%), Positives = 52/88 (59%), Gaps = 1/88 (1%)
Frame = +3
Query: 510 VNSVDDLTEDALGFA-GLVYEHVLGEDKFTFVEQCKNPQSVTILIKGPNKHTLTQIKDAV 686
VN ++DL E +G GL Y LG++ +TF+ CKNP++ TIL++GP+K + +++ +
Sbjct: 330 VNRLEDLREKDVGTGCGLFYIDKLGDEYYTFLTGCKNPKACTILLRGPSKDIINEVERNL 389
Query: 687 RDGLRAINNAIEDKCVIPGAAAFEIKLT 770
+D + N + PG A E+ ++
Sbjct: 390 QDAMAVARNVFFHPKLSPGGGATEMAVS 417
Score = 38.3 bits (85), Expect = 0.001
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Frame = +1
Query: 349 KKLCDG--TDKTFVVINQKGIDPLSLDAFAKEGIIGLRRAKRRNMERLALACGGSVL 513
K++CD K +VI +KG+ L+ K I LRR ++ + R+A ACG +++
Sbjct: 274 KRMCDYIIAVKPDLVITEKGVSDLAQHYLLKANITALRRTRKSDNNRIARACGANIV 330
Score = 32.3 bits (70), Expect = 0.082
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = +2
Query: 131 LVKGLVMDHGARHPDMPKRVENAYILTCNVSLEYEKTE 244
++ G++++ HP M +R+EN I+ + LEY K E
Sbjct: 212 VLDGVMLNKDVTHPKMRRRIENPRIVLLDCPLEYRKGE 249
>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
Cct7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 558
Score = 47.6 bits (108), Expect = 2e-06
Identities = 20/94 (21%), Positives = 50/94 (53%)
Frame = +3
Query: 492 SVRGVRVNSVDDLTEDALGFAGLVYEHVLGEDKFTFVEQCKNPQSVTILIKGPNKHTLTQ 671
+V G ++ ++ E LG E +G D+F E C ++ T++++G + +
Sbjct: 330 AVGGSIQSTCSNIEEKHLGTCDTFEERQIGGDRFNLFEGCPKAKTCTLILRGGADQFIAE 389
Query: 672 IKDAVRDGLRAINNAIEDKCVIPGAAAFEIKLTR 773
++ ++ D + + +A+++ V+ G A E++L++
Sbjct: 390 VERSLHDAIMIVKHALKNNLVVAGGGACEMELSK 423
>SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit
Cct1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 47.2 bits (107), Expect = 3e-06
Identities = 22/76 (28%), Positives = 42/76 (55%)
Frame = +3
Query: 543 LGFAGLVYEHVLGEDKFTFVEQCKNPQSVTILIKGPNKHTLTQIKDAVRDGLRAINNAIE 722
LG A V + +D+ V+ K S +I+++GPN+++L +++ ++ D L + +E
Sbjct: 350 LGSAEEVVQEKFSDDECILVKGTKAYSSASIVLRGPNEYSLDEMERSMHDSLSVVKRTLE 409
Query: 723 DKCVIPGAAAFEIKLT 770
V+PG A E L+
Sbjct: 410 SGKVVPGGGAVETALS 425
Score = 36.7 bits (81), Expect = 0.004
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Frame = +2
Query: 8 ADVLTDACVDAVLTIRTPGKPVD----LHMVEIMEMKHKTATETVLVKGLVMDHGARHPD 175
+D + VDA+L+++T + + V I++ K++ E+VLVKG ++
Sbjct: 170 SDFFSTMAVDAMLSVKTSNSKGETRYPVKAVNILKAHGKSSRESVLVKGYALNCTIASQA 229
Query: 176 MPKRVENAYILTCNVSLEYEK 238
M RV+NA I ++ L+ K
Sbjct: 230 MKTRVQNAKIAVLDMDLQKTK 250
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 29.9 bits (64), Expect = 0.44
Identities = 17/45 (37%), Positives = 21/45 (46%)
Frame = -2
Query: 607 CSTKVNLSSPSTCS*TRPAKPKASSVRSSTELTRTPRTLGLDVPY 473
C+T ++ P T + T P P SST LT T T VPY
Sbjct: 393 CTTSTSI--PPTGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPY 435
>SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr
2|||Manual
Length = 997
Score = 26.6 bits (56), Expect = 4.1
Identities = 10/24 (41%), Positives = 11/24 (45%)
Frame = +1
Query: 127 CTCKRSSNGSWCTSPRYAKACRKC 198
C +R SNG WCT K C
Sbjct: 973 CIIERDSNGRWCTKHLQRKTKEVC 996
>SPAC15A10.13 |ppk3||serine/threonine protein kinase
Ppk3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 637
Score = 26.6 bits (56), Expect = 4.1
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Frame = -3
Query: 372 VSTVA*FLFES-NDLSYSLINKFPFSSNKLFSILSRLV-EEAEFTSVFSYSNDT 217
+ + A F+ ++ + Y L K P SSN ++++ + + E A+ SVFS S T
Sbjct: 4 IKSAASFIAKAGSQFPYDLNEKIPLSSNSVWTLQTGSIRESAQPCSVFSISLST 57
>SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory
subunit Ekc1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 838
Score = 26.6 bits (56), Expect = 4.1
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = -1
Query: 686 NCIFDLCQGMLVGSLDEDGNRLWVLALFNKGKL 588
N ++D+ Q +L +D+D N + +F +GK+
Sbjct: 544 NVVYDVVQQVLNAPMDKDQNYALAVDMFKQGKI 576
>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1026
Score = 26.6 bits (56), Expect = 4.1
Identities = 12/49 (24%), Positives = 21/49 (42%)
Frame = +1
Query: 256 FFYKSAEDREKLVAAEREFIDQRVRKIVALKKKLCDGTDKTFVVINQKG 402
+FY+ + ER + KI+ KK L G+ F+ ++ G
Sbjct: 401 YFYQQLQGERWRFLCERALQSSSITKIIHAKKSLSSGSSGLFIFMSLDG 449
>SPAC4G9.11c |cmb1||cytosine-mismatch binding protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 223
Score = 26.2 bits (55), Expect = 5.4
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = +2
Query: 164 RHPDMPKRVENAYIL 208
RHPD+PK+ +A+IL
Sbjct: 142 RHPDVPKKPSSAFIL 156
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 25.8 bits (54), Expect = 7.1
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +3
Query: 594 TFVEQCKNPQSVTILIKGPNKH 659
++ E P S+T L K PNKH
Sbjct: 562 SYRESVSEPSSMTALSKSPNKH 583
>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1258
Score = 25.8 bits (54), Expect = 7.1
Identities = 17/63 (26%), Positives = 29/63 (46%)
Frame = +1
Query: 337 VALKKKLCDGTDKTFVVINQKGIDPLSLDAFAKEGIIGLRRAKRRNMERLALACGGSVLT 516
+ + KL D D V++N++ + + AK I A N+E +AL G LT
Sbjct: 800 IGMSCKLID-EDMGLVIVNEETKEATAESVMAKLSSIYRNEATTGNVESMALVIDGVSLT 858
Query: 517 LSM 525
++
Sbjct: 859 YAL 861
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 25.8 bits (54), Expect = 7.1
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +3
Query: 594 TFVEQCKNPQSVTILIKGPNKH 659
++ E P S+T L K PNKH
Sbjct: 562 SYRESVSEPSSMTALSKSPNKH 583
>SPAC57A10.06 |mug15||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 133
Score = 25.8 bits (54), Expect = 7.1
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Frame = +2
Query: 74 DLHMVEIMEMKHKTATETVLVKGLVMDHGARHPDMPKRVENAYILTCNVSLE--YEKTEV 247
+L + + + + TV K L+ G D+P ++ I CN+ LE E T++
Sbjct: 43 ELDALTTISLDELNKSPTVFTKNLLQGCGGTDLDVPAELKRLVIFVCNI-LESCNEFTDL 101
Query: 248 NSA 256
SA
Sbjct: 102 GSA 104
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 25.4 bits (53), Expect = 9.4
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +1
Query: 547 ALQA*STNTYSEKTSLPLLNNARTHNLLPSSSRDPTS 657
+L A ST+T + S+ N + T +L+PSSS D +S
Sbjct: 569 SLTATSTSTPALTHSITPSNTSYTSSLIPSSSTDYSS 605
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 25.4 bits (53), Expect = 9.4
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +1
Query: 574 YSEKTSLPLLNNARTHNLLPSSSRDPTSIP 663
Y TS+PL + HNL+ SR P+S P
Sbjct: 1714 YGLSTSVPLYTSLEKHNLI---SRSPSSPP 1740
>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
Cct2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 25.4 bits (53), Expect = 9.4
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +1
Query: 427 FAKEGIIGLRRAKRRNMERLALACGGSV 510
FA GI+ + A +ERL+L GG +
Sbjct: 300 FADAGIMSIEHADFDGIERLSLVTGGEI 327
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,092,621
Number of Sequences: 5004
Number of extensions: 61328
Number of successful extensions: 217
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 215
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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