Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00076
(791 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.) 75 5e-14
SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0) 60 2e-09
SB_49103| Best HMM Match : Cpn60_TCP1 (HMM E-Value=2.5e-05) 60 2e-09
SB_25100| Best HMM Match : No HMM Matches (HMM E-Value=.) 56 3e-08
SB_17755| Best HMM Match : No HMM Matches (HMM E-Value=.) 54 1e-07
SB_56828| Best HMM Match : No HMM Matches (HMM E-Value=.) 50 2e-06
SB_8111| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0) 38 0.007
SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_14171| Best HMM Match : Chitin_synth_2 (HMM E-Value=7.7e-07) 29 4.3
SB_43930| Best HMM Match : ANF_receptor (HMM E-Value=0) 29 5.7
SB_19447| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.7
SB_52108| Best HMM Match : DUF1053 (HMM E-Value=6) 29 5.7
SB_27914| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.7
SB_32293| Best HMM Match : BRCA2 (HMM E-Value=0) 28 7.5
SB_21130| Best HMM Match : Smg4_UPF3 (HMM E-Value=1.5) 28 7.5
SB_58675| Best HMM Match : RVT_1 (HMM E-Value=0) 28 10.0
SB_16776| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 10.0
SB_53063| Best HMM Match : DUF359 (HMM E-Value=2.9) 28 10.0
SB_42803| Best HMM Match : CagY_M (HMM E-Value=1.3) 28 10.0
SB_32237| Best HMM Match : PGM_PMM_II (HMM E-Value=0.023) 28 10.0
>SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 762
Score = 75.4 bits (177), Expect = 5e-14
Identities = 33/48 (68%), Positives = 43/48 (89%)
Frame = +1
Query: 256 FFYKSAEDREKLVAAEREFIDQRVRKIVALKKKLCDGTDKTFVVINQK 399
FFYKS+E+REKLVAAER+F D +V+KI+ LKK++C+G +K FVVINQK
Sbjct: 313 FFYKSSEEREKLVAAERKFTDDKVQKIIDLKKQVCEGNNKGFVVINQK 360
Score = 65.3 bits (152), Expect = 5e-11
Identities = 28/41 (68%), Positives = 36/41 (87%)
Frame = +2
Query: 5 LADVLTDACVDAVLTIRTPGKPVDLHMVEIMEMKHKTATET 127
LAD+LT+ VDAVLTIR P KP+DLHMVE+MEM+HKT +++
Sbjct: 266 LADLLTEVVVDAVLTIRKPKKPIDLHMVEVMEMRHKTDSDS 306
>SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
Length = 505
Score = 60.1 bits (139), Expect = 2e-09
Identities = 30/81 (37%), Positives = 47/81 (58%), Gaps = 2/81 (2%)
Frame = +3
Query: 525 DLTEDALGFAGLVYEHVLG--EDKFTFVEQCKNPQSVTILIKGPNKHTLTQIKDAVRDGL 698
+LT + LG AG+V E G +DK +E+C N ++VTI I+G NK + + K ++ D L
Sbjct: 345 ELTSEKLGKAGIVRELSFGTTKDKMLVIEECHNSRAVTIFIRGGNKMIVGEAKRSIHDAL 404
Query: 699 RAINNAIEDKCVIPGAAAFEI 761
+ N + D V+ G A E+
Sbjct: 405 CVVRNLVRDSRVVYGGGATEL 425
Score = 49.2 bits (112), Expect = 4e-06
Identities = 30/79 (37%), Positives = 44/79 (55%), Gaps = 3/79 (3%)
Frame = +2
Query: 17 LTDACVDAVLTIRT-PGKPVDLHMVEIMEMKHKTATETVLVKGLVMDHGARHPDMPKRVE 193
L + VDAVL++ K VD ++++ + +TVLVKG+V+D HP MPK V+
Sbjct: 183 LAEIAVDAVLSVADLERKDVDFELIKVEGKEGGKLDDTVLVKGVVVDKDMSHPQMPKVVK 242
Query: 194 NA--YILTCNVSLEYEKTE 244
+A ILTC KT+
Sbjct: 243 DAKIAILTCPFEPPKPKTK 261
>SB_49103| Best HMM Match : Cpn60_TCP1 (HMM E-Value=2.5e-05)
Length = 206
Score = 60.1 bits (139), Expect = 2e-09
Identities = 30/81 (37%), Positives = 47/81 (58%), Gaps = 2/81 (2%)
Frame = +3
Query: 525 DLTEDALGFAGLVYEHVLG--EDKFTFVEQCKNPQSVTILIKGPNKHTLTQIKDAVRDGL 698
+LT + LG AG+V E G +DK +E+C N ++VTI I+G NK + + K ++ D L
Sbjct: 60 ELTSEKLGKAGIVRELSFGTTKDKMLVIEECHNSRAVTIFIRGGNKMIVGEAKRSIHDAL 119
Query: 699 RAINNAIEDKCVIPGAAAFEI 761
+ N + D V+ G A E+
Sbjct: 120 CVVRNLVRDSRVVYGGGATEL 140
>SB_25100| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 546
Score = 56.0 bits (129), Expect = 3e-08
Identities = 22/59 (37%), Positives = 38/59 (64%)
Frame = +3
Query: 591 FTFVEQCKNPQSVTILIKGPNKHTLTQIKDAVRDGLRAINNAIEDKCVIPGAAAFEIKL 767
FTF+ +CKNP++ TIL++G +K L +++ ++D + N I D ++PG A E+ L
Sbjct: 149 FTFITECKNPKACTILLRGASKDVLNEVERNLQDAMNVARNVIVDPRLVPGGGACEMAL 207
Score = 44.0 bits (99), Expect = 1e-04
Identities = 28/99 (28%), Positives = 47/99 (47%)
Frame = +1
Query: 217 CVIRV*KDRSKFCFFYKSAEDREKLVAAEREFIDQRVRKIVALKKKLCDGTDKTFVVINQ 396
C + K S+ S D +++ E EFI + +++ALK L VI +
Sbjct: 5 CNLEYKKGESQTSLELSSDTDFSRVLQLEEEFIKKMCDEVIALKPDL---------VITE 55
Query: 397 KGIDPLSLDAFAKEGIIGLRRAKRRNMERLALACGGSVL 513
KGI L+ K I +RR ++ + R+A ACG +++
Sbjct: 56 KGISDLAQHFLMKANITAIRRVRKTDNNRIARACGATIV 94
>SB_17755| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 317
Score = 54.0 bits (124), Expect = 1e-07
Identities = 21/59 (35%), Positives = 37/59 (62%)
Frame = +3
Query: 591 FTFVEQCKNPQSVTILIKGPNKHTLTQIKDAVRDGLRAINNAIEDKCVIPGAAAFEIKL 767
FTF+ +C NP++ TIL++G +K L +++ ++D + N I D ++PG A E+ L
Sbjct: 206 FTFITECNNPKACTILLRGASKDVLNEVERNLQDAMNVARNVIVDPRLVPGGGACEMAL 264
>SB_56828| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 525
Score = 50.0 bits (114), Expect = 2e-06
Identities = 29/82 (35%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Frame = +3
Query: 531 TEDALGFAGLVYEHVLGEDKFTFVEQCKNPQSV-TILIKGPNKHTLTQIKDAVRDGLRAI 707
TED LG LVY +GE T +Q + +V T++I+G ++ + I+ A+ DG+ +
Sbjct: 195 TED-LGHCDLVYLSEIGETPVTIFKQEREETAVATVVIRGSTENIMDDIERAIDDGVNSF 253
Query: 708 NNAIEDKCVIPGAAAFEIKLTR 773
D +PGA A EI+L R
Sbjct: 254 KALTRDPRFVPGAGASEIELAR 275
>SB_8111| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
Length = 531
Score = 38.3 bits (85), Expect = 0.007
Identities = 18/73 (24%), Positives = 36/73 (49%)
Frame = +3
Query: 543 LGFAGLVYEHVLGEDKFTFVEQCKNPQSVTILIKGPNKHTLTQIKDAVRDGLRAINNAIE 722
LG + E ++GEDK C ++ T++I+G + L + + ++ D L +N +
Sbjct: 340 LGTCKKIEEVMIGEDKLIHFSGCALNEACTVVIRGATQQILDEAERSLHDALCVLNQTGK 399
Query: 723 DKCVIPGAAAFEI 761
+ + G A E+
Sbjct: 400 ENKTVNGGGASEV 412
Score = 36.7 bits (81), Expect = 0.022
Identities = 23/79 (29%), Positives = 42/79 (53%)
Frame = +2
Query: 11 DVLTDACVDAVLTIRTPGKPVDLHMVEIMEMKHKTATETVLVKGLVMDHGARHPDMPKRV 190
D VDAVL ++ G DL+ ++I++ ++ L +G ++D + PK++
Sbjct: 174 DHFAKLAVDAVLRLKGSG---DLNAIQIIKKLGGGMVDSFLDEGFLLDKKIG-VNQPKKI 229
Query: 191 ENAYILTCNVSLEYEKTEV 247
ENA IL N ++ +K +V
Sbjct: 230 ENAKILIANTPMDADKIKV 248
Score = 28.3 bits (60), Expect = 7.5
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +1
Query: 388 INQKGIDPLSLDAFAKEGIIGLRRAKRRNMERLALACGGSVLT 516
IN++ I FA G++ + A +ERLAL GG +++
Sbjct: 288 INRQLIYNYPEQLFADAGVMAIEHADFEGVERLALVTGGEIVS 330
>SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5834
Score = 29.1 bits (62), Expect = 4.3
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Frame = +1
Query: 127 CTCKRSSNGSWCTS--PRY-AKACRKCIHSHM 213
CTC+ +GS C S PRY C +C+ +++
Sbjct: 397 CTCRHGFSGSSCESCQPRYTGSECERCVTNYI 428
>SB_14171| Best HMM Match : Chitin_synth_2 (HMM E-Value=7.7e-07)
Length = 1188
Score = 29.1 bits (62), Expect = 4.3
Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 11/78 (14%)
Frame = +2
Query: 32 VDAVLTIRTP-----------GKPVDLHMVEIMEMKHKTATETVLVKGLVMDHGARHPDM 178
V+AV+ I+TP G P +H+ + +++K+K V+ ++D+ + M
Sbjct: 467 VEAVMKIKTPYGMQFRWRLPGGMPFHIHLKDNLKVKNKKRWSQVMYMSYILDY--KEGTM 524
Query: 179 PKRVENAYILTCNVSLEY 232
EN YIL + + +
Sbjct: 525 GSTDENTYILATDADVRF 542
>SB_43930| Best HMM Match : ANF_receptor (HMM E-Value=0)
Length = 915
Score = 28.7 bits (61), Expect = 5.7
Identities = 18/56 (32%), Positives = 31/56 (55%)
Frame = +1
Query: 586 TSLPLLNNARTHNLLPSSSRDPTSIP*HKSKMQFVTASALLITPLKINASYPVLRP 753
TS+ LL R + + +R + +KMQF+TASAL P+ ++A + ++ P
Sbjct: 670 TSIMLLKTDRLLRVFRAKARLTSRSNLLTNKMQFLTASALTSFPVVMSAVWFLISP 725
>SB_19447| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1110
Score = 28.7 bits (61), Expect = 5.7
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +1
Query: 634 SSSRDPTSIP*HKSKMQFVTASALLITPL 720
+SS +P H+ K+Q+ S LLITPL
Sbjct: 243 ASSSNPDQDADHQKKVQYTKGSVLLITPL 271
>SB_52108| Best HMM Match : DUF1053 (HMM E-Value=6)
Length = 349
Score = 28.7 bits (61), Expect = 5.7
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = +2
Query: 17 LTDACVDAVLTIRT--PGKPVDLHMVEIMEMKHKTATETVLVKGLVMDHGAR 166
LT D +L +R+ PG+ V+ HM++ ++ K T E + L H +R
Sbjct: 124 LTPDVNDHMLQVRSHAPGERVNDHMLQTLQTKDTTLQEAITTATLARSHYSR 175
>SB_27914| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 220
Score = 28.7 bits (61), Expect = 5.7
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = -1
Query: 674 DLCQGMLVGSLDEDGNRL 621
DLC+ LVG++DE G RL
Sbjct: 147 DLCETFLVGNVDESGRRL 164
>SB_32293| Best HMM Match : BRCA2 (HMM E-Value=0)
Length = 1649
Score = 28.3 bits (60), Expect = 7.5
Identities = 18/61 (29%), Positives = 32/61 (52%)
Frame = +1
Query: 550 LQA*STNTYSEKTSLPLLNNARTHNLLPSSSRDPTSIP*HKSKMQFVTASALLITPLKIN 729
LQ S NT E TSLP L +L+P +S + T ++S+ + A + L++ ++
Sbjct: 114 LQNESDNTSLEVTSLPELEENSELSLMPFASENTTKTTSNRSEREPAPAVSPLVSSQEVK 173
Query: 730 A 732
+
Sbjct: 174 S 174
>SB_21130| Best HMM Match : Smg4_UPF3 (HMM E-Value=1.5)
Length = 565
Score = 28.3 bits (60), Expect = 7.5
Identities = 18/61 (29%), Positives = 32/61 (52%)
Frame = +1
Query: 550 LQA*STNTYSEKTSLPLLNNARTHNLLPSSSRDPTSIP*HKSKMQFVTASALLITPLKIN 729
LQ S NT E TSLP L +L+P +S + T ++S+ + A + L++ ++
Sbjct: 255 LQNESDNTSLEVTSLPELEENSELSLMPFASENTTKTTSNRSEREPAPAVSPLVSSQEVK 314
Query: 730 A 732
+
Sbjct: 315 S 315
>SB_58675| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 2353
Score = 27.9 bits (59), Expect = 10.0
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = +3
Query: 597 FVEQCKNPQSVTILIKGPNKHTLTQIKDAVRDGLRAINNAIEDKCVI 737
F++ C N + + IL K P K +R RA +E+KC +
Sbjct: 774 FIQTCDNSEPLCIL-KSPKKSVSIPGGQTLRINCRANTGPVEEKCPV 819
>SB_16776| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1306
Score = 27.9 bits (59), Expect = 10.0
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +1
Query: 64 QTC*SAHG*NYGDETQDCY*NCTCKRSSNGSWCTSP 171
QTC HG N+ QDC N C+ + TSP
Sbjct: 767 QTCSVCHGKNFIIRCQDCVHNFLCQSCDDFVHTTSP 802
>SB_53063| Best HMM Match : DUF359 (HMM E-Value=2.9)
Length = 378
Score = 27.9 bits (59), Expect = 10.0
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = +3
Query: 597 FVEQCKNPQSVTILIKGPNKHTLTQIKDAVRDGLRAINNAIEDKCVI 737
F++ C N + + IL K P K +R RA +E+KC +
Sbjct: 19 FIQTCDNSEPLCIL-KSPKKSVSIPGGQTLRINCRANTGPVEEKCPV 64
>SB_42803| Best HMM Match : CagY_M (HMM E-Value=1.3)
Length = 364
Score = 27.9 bits (59), Expect = 10.0
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +2
Query: 374 RLSSLSTKKESTPCHWMLLPKKVLLDYAEQK 466
RLS L KK+ CH +L + LD +QK
Sbjct: 241 RLSKLENKKQKMECHDLLADRHSKLDNEKQK 271
>SB_32237| Best HMM Match : PGM_PMM_II (HMM E-Value=0.023)
Length = 384
Score = 27.9 bits (59), Expect = 10.0
Identities = 14/46 (30%), Positives = 27/46 (58%)
Frame = +1
Query: 268 SAEDREKLVAAEREFIDQRVRKIVALKKKLCDGTDKTFVVINQKGI 405
++EDR V + +D+++ + +AL K L ++TF I +KG+
Sbjct: 2 ASEDRPPEVNTGKPELDEKILEWLALDKGLAVYLEQTFEDIKEKGV 47
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,597,024
Number of Sequences: 59808
Number of extensions: 470146
Number of successful extensions: 2493
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 2104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2491
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2179815638
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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