Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00076
(791 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U13070-2|AAC46642.1| 539|Caenorhabditis elegans Chaperonin cont... 142 3e-34
U13070-3|AAM22058.1| 429|Caenorhabditis elegans Chaperonin cont... 125 4e-29
Z35599-3|CAA84660.1| 542|Caenorhabditis elegans Hypothetical pr... 60 2e-09
Z32840-7|CAA83681.1| 542|Caenorhabditis elegans Hypothetical pr... 60 2e-09
Z32840-6|CAD01079.1| 336|Caenorhabditis elegans Hypothetical pr... 60 2e-09
U25698-1|AAA92843.1| 542|Caenorhabditis elegans CCT-5 protein. 60 2e-09
AF067947-11|AAO25994.1| 455|Caenorhabditis elegans Hypothetical... 56 3e-08
AF067947-10|AAC19232.2| 535|Caenorhabditis elegans Hypothetical... 56 3e-08
Z49068-8|CAA88861.1| 540|Caenorhabditis elegans Hypothetical pr... 54 2e-07
U25697-1|AAA92842.1| 540|Caenorhabditis elegans CCT-4 protein. 54 2e-07
AC024136-4|AAF35963.3| 543|Caenorhabditis elegans Hypothetical ... 50 3e-06
Z66500-12|CAA91308.1| 549|Caenorhabditis elegans Hypothetical p... 38 0.006
U07941-1|AAB05072.1| 549|Caenorhabditis elegans CCT-1 protein. 38 0.006
AL021492-1|CAA16377.1| 179|Caenorhabditis elegans Hypothetical ... 30 1.7
U20861-4|AAA62296.3| 297|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z68012-1|CAA92016.1| 304|Caenorhabditis elegans Hypothetical pr... 29 3.8
AL132876-6|CAC48121.2| 350|Caenorhabditis elegans Hypothetical ... 29 3.8
AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical ... 29 3.8
Z78542-3|CAB01745.2| 463|Caenorhabditis elegans Hypothetical pr... 28 6.7
>U13070-2|AAC46642.1| 539|Caenorhabditis elegans Chaperonin
containing tcp-1 protein6, isoform a protein.
Length = 539
Score = 142 bits (343), Expect = 3e-34
Identities = 64/90 (71%), Positives = 78/90 (86%)
Frame = +3
Query: 492 SVRGVRVNSVDDLTEDALGFAGLVYEHVLGEDKFTFVEQCKNPQSVTILIKGPNKHTLTQ 671
+V G VNSVDDLT + LG+AGLVYEH LGE+K+TF+E+C+ P+SVT+LIKGPNKHT+TQ
Sbjct: 331 AVGGEAVNSVDDLTPEDLGWAGLVYEHSLGEEKYTFIEECRAPKSVTLLIKGPNKHTITQ 390
Query: 672 IKDAVRDGLRAINNAIEDKCVIPGAAAFEI 761
IKDA+ DGLRA+ N I DK V+PGAAAFEI
Sbjct: 391 IKDAIHDGLRAVFNTIVDKAVLPGAAAFEI 420
Score = 124 bits (300), Expect = 6e-29
Identities = 58/83 (69%), Positives = 68/83 (81%)
Frame = +2
Query: 5 LADVLTDACVDAVLTIRTPGKPVDLHMVEIMEMKHKTATETVLVKGLVMDHGARHPDMPK 184
LAD +T+ VDAVL IR G+ DLHMVE MEM H + +T LV+GLV+DHGARHPDMP+
Sbjct: 164 LADHITECVVDAVLAIRRDGEEPDLHMVEKMEMHHDSDMDTTLVRGLVLDHGARHPDMPR 223
Query: 185 RVENAYILTCNVSLEYEKTEVNS 253
V++AYILTCNVSLEYEKTEVNS
Sbjct: 224 HVKDAYILTCNVSLEYEKTEVNS 246
Score = 114 bits (275), Expect = 6e-26
Identities = 59/89 (66%), Positives = 69/89 (77%), Gaps = 4/89 (4%)
Frame = +1
Query: 259 FYKSAEDREKLVAAEREFIDQRVRKIVALKKKLCD----GTDKTFVVINQKGIDPLSLDA 426
FYK+A++RE L+AAEREFI +RV KI+ LKKK+ D G +K FVVINQKGIDP SLD
Sbjct: 249 FYKTAKEREALLAAEREFITRRVHKIIELKKKVIDNSPDGKNKGFVVINQKGIDPPSLDL 308
Query: 427 FAKEGIIGLRRAKRRNMERLALACGGSVL 513
A EGI+ LRRAKRRNMERL LA GG +
Sbjct: 309 LASEGILALRRAKRRNMERLQLAVGGEAV 337
>U13070-3|AAM22058.1| 429|Caenorhabditis elegans Chaperonin
containing tcp-1 protein6, isoform b protein.
Length = 429
Score = 125 bits (301), Expect = 4e-29
Identities = 55/80 (68%), Positives = 68/80 (85%)
Frame = +3
Query: 492 SVRGVRVNSVDDLTEDALGFAGLVYEHVLGEDKFTFVEQCKNPQSVTILIKGPNKHTLTQ 671
+V G VNSVDDLT + LG+AGLVYEH LGE+K+TF+E+C+ P+SVT+LIKGPNKHT+TQ
Sbjct: 331 AVGGEAVNSVDDLTPEDLGWAGLVYEHSLGEEKYTFIEECRAPKSVTLLIKGPNKHTITQ 390
Query: 672 IKDAVRDGLRAINNAIEDKC 731
IKDA+ DGLRA+ N I D C
Sbjct: 391 IKDAIHDGLRAVFNTIVDSC 410
Score = 124 bits (300), Expect = 6e-29
Identities = 58/83 (69%), Positives = 68/83 (81%)
Frame = +2
Query: 5 LADVLTDACVDAVLTIRTPGKPVDLHMVEIMEMKHKTATETVLVKGLVMDHGARHPDMPK 184
LAD +T+ VDAVL IR G+ DLHMVE MEM H + +T LV+GLV+DHGARHPDMP+
Sbjct: 164 LADHITECVVDAVLAIRRDGEEPDLHMVEKMEMHHDSDMDTTLVRGLVLDHGARHPDMPR 223
Query: 185 RVENAYILTCNVSLEYEKTEVNS 253
V++AYILTCNVSLEYEKTEVNS
Sbjct: 224 HVKDAYILTCNVSLEYEKTEVNS 246
Score = 114 bits (275), Expect = 6e-26
Identities = 59/89 (66%), Positives = 69/89 (77%), Gaps = 4/89 (4%)
Frame = +1
Query: 259 FYKSAEDREKLVAAEREFIDQRVRKIVALKKKLCD----GTDKTFVVINQKGIDPLSLDA 426
FYK+A++RE L+AAEREFI +RV KI+ LKKK+ D G +K FVVINQKGIDP SLD
Sbjct: 249 FYKTAKEREALLAAEREFITRRVHKIIELKKKVIDNSPDGKNKGFVVINQKGIDPPSLDL 308
Query: 427 FAKEGIIGLRRAKRRNMERLALACGGSVL 513
A EGI+ LRRAKRRNMERL LA GG +
Sbjct: 309 LASEGILALRRAKRRNMERLQLAVGGEAV 337
>Z35599-3|CAA84660.1| 542|Caenorhabditis elegans Hypothetical
protein C07G2.3a protein.
Length = 542
Score = 59.7 bits (138), Expect = 2e-09
Identities = 29/81 (35%), Positives = 48/81 (59%), Gaps = 2/81 (2%)
Frame = +3
Query: 525 DLTEDALGFAGLVYEHVLG--EDKFTFVEQCKNPQSVTILIKGPNKHTLTQIKDAVRDGL 698
+L+++ LG AGLV E G +D+ +EQC N ++VTI ++G NK + + K A+ D L
Sbjct: 346 ELSKEKLGTAGLVREITFGAAKDRMLSIEQCPNNKAVTIFVRGGNKMIIDEAKRALHDAL 405
Query: 699 RAINNAIEDKCVIPGAAAFEI 761
I N + D ++ G + E+
Sbjct: 406 CVIRNLVRDSRIVYGGGSAEL 426
Score = 47.2 bits (107), Expect = 1e-05
Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 3/77 (3%)
Frame = +2
Query: 23 DACVDAVLTIRT-PGKPVDLHMVEIMEMKHKTATETVLVKGLVMDHGARHPDMPKRVENA 199
+ VDAVL++ K V+ M+++ +T+LVKG+V+D HP MPK ++NA
Sbjct: 186 EIAVDAVLSVADIESKDVNFEMIKMEGKVGGRLEDTILVKGIVIDKTMSHPQMPKELKNA 245
Query: 200 --YILTCNVSLEYEKTE 244
ILTC KT+
Sbjct: 246 KVAILTCPFEPPKPKTK 262
>Z32840-7|CAA83681.1| 542|Caenorhabditis elegans Hypothetical
protein C07G2.3a protein.
Length = 542
Score = 59.7 bits (138), Expect = 2e-09
Identities = 29/81 (35%), Positives = 48/81 (59%), Gaps = 2/81 (2%)
Frame = +3
Query: 525 DLTEDALGFAGLVYEHVLG--EDKFTFVEQCKNPQSVTILIKGPNKHTLTQIKDAVRDGL 698
+L+++ LG AGLV E G +D+ +EQC N ++VTI ++G NK + + K A+ D L
Sbjct: 346 ELSKEKLGTAGLVREITFGAAKDRMLSIEQCPNNKAVTIFVRGGNKMIIDEAKRALHDAL 405
Query: 699 RAINNAIEDKCVIPGAAAFEI 761
I N + D ++ G + E+
Sbjct: 406 CVIRNLVRDSRIVYGGGSAEL 426
Score = 47.2 bits (107), Expect = 1e-05
Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 3/77 (3%)
Frame = +2
Query: 23 DACVDAVLTIRT-PGKPVDLHMVEIMEMKHKTATETVLVKGLVMDHGARHPDMPKRVENA 199
+ VDAVL++ K V+ M+++ +T+LVKG+V+D HP MPK ++NA
Sbjct: 186 EIAVDAVLSVADIESKDVNFEMIKMEGKVGGRLEDTILVKGIVIDKTMSHPQMPKELKNA 245
Query: 200 --YILTCNVSLEYEKTE 244
ILTC KT+
Sbjct: 246 KVAILTCPFEPPKPKTK 262
>Z32840-6|CAD01079.1| 336|Caenorhabditis elegans Hypothetical
protein C07G2.3b protein.
Length = 336
Score = 59.7 bits (138), Expect = 2e-09
Identities = 29/81 (35%), Positives = 48/81 (59%), Gaps = 2/81 (2%)
Frame = +3
Query: 525 DLTEDALGFAGLVYEHVLG--EDKFTFVEQCKNPQSVTILIKGPNKHTLTQIKDAVRDGL 698
+L+++ LG AGLV E G +D+ +EQC N ++VTI ++G NK + + K A+ D L
Sbjct: 140 ELSKEKLGTAGLVREITFGAAKDRMLSIEQCPNNKAVTIFVRGGNKMIIDEAKRALHDAL 199
Query: 699 RAINNAIEDKCVIPGAAAFEI 761
I N + D ++ G + E+
Sbjct: 200 CVIRNLVRDSRIVYGGGSAEL 220
Score = 39.9 bits (89), Expect = 0.002
Identities = 20/43 (46%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
Frame = +2
Query: 122 ETVLVKGLVMDHGARHPDMPKRVENA--YILTCNVSLEYEKTE 244
+T+LVKG+V+D HP MPK ++NA ILTC KT+
Sbjct: 14 DTILVKGIVIDKTMSHPQMPKELKNAKVAILTCPFEPPKPKTK 56
>U25698-1|AAA92843.1| 542|Caenorhabditis elegans CCT-5 protein.
Length = 542
Score = 59.7 bits (138), Expect = 2e-09
Identities = 29/81 (35%), Positives = 48/81 (59%), Gaps = 2/81 (2%)
Frame = +3
Query: 525 DLTEDALGFAGLVYEHVLG--EDKFTFVEQCKNPQSVTILIKGPNKHTLTQIKDAVRDGL 698
+L+++ LG AGLV E G +D+ +EQC N ++VTI ++G NK + + K A+ D L
Sbjct: 346 ELSKEKLGTAGLVREITFGAAKDRMLSIEQCPNNKAVTIFVRGGNKMIIDEAKRALHDAL 405
Query: 699 RAINNAIEDKCVIPGAAAFEI 761
I N + D ++ G + E+
Sbjct: 406 CVIRNLVRDSRIVYGGGSAEL 426
Score = 47.2 bits (107), Expect = 1e-05
Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 3/77 (3%)
Frame = +2
Query: 23 DACVDAVLTIRT-PGKPVDLHMVEIMEMKHKTATETVLVKGLVMDHGARHPDMPKRVENA 199
+ VDAVL++ K V+ M+++ +T+LVKG+V+D HP MPK ++NA
Sbjct: 186 EIAVDAVLSVADIESKDVNFEMIKMEGKVGGRLEDTILVKGIVIDKTMSHPQMPKELKNA 245
Query: 200 --YILTCNVSLEYEKTE 244
ILTC KT+
Sbjct: 246 KVAILTCPFEPPKPKTK 262
>AF067947-11|AAO25994.1| 455|Caenorhabditis elegans Hypothetical
protein T10B5.5b protein.
Length = 455
Score = 56.0 bits (129), Expect = 3e-08
Identities = 22/91 (24%), Positives = 49/91 (53%)
Frame = +3
Query: 501 GVRVNSVDDLTEDALGFAGLVYEHVLGEDKFTFVEQCKNPQSVTILIKGPNKHTLTQIKD 680
G + +V + + LG G YE +G +++ F E C Q+ T+L++G + + + +
Sbjct: 326 GSVLTTVSQIDDSVLGKCGKFYEQQVGSERYNFFEDCSKAQACTLLLRGGAEQFIAETER 385
Query: 681 AVRDGLRAINNAIEDKCVIPGAAAFEIKLTR 773
++ D + + A ++ ++ G A E++L+R
Sbjct: 386 SLHDAIMIVRRAKKNDSIVAGGGAIEMELSR 416
Score = 30.7 bits (66), Expect = 1.2
Identities = 16/45 (35%), Positives = 26/45 (57%)
Frame = +1
Query: 382 VVINQKGIDPLSLDAFAKEGIIGLRRAKRRNMERLALACGGSVLT 516
VV+++ I ++ FA + R + +++RL ACGGSVLT
Sbjct: 286 VVLSKLPIGDVATQWFADRDMFCAGRIPQDDLDRLMSACGGSVLT 330
>AF067947-10|AAC19232.2| 535|Caenorhabditis elegans Hypothetical
protein T10B5.5a protein.
Length = 535
Score = 56.0 bits (129), Expect = 3e-08
Identities = 22/91 (24%), Positives = 49/91 (53%)
Frame = +3
Query: 501 GVRVNSVDDLTEDALGFAGLVYEHVLGEDKFTFVEQCKNPQSVTILIKGPNKHTLTQIKD 680
G + +V + + LG G YE +G +++ F E C Q+ T+L++G + + + +
Sbjct: 326 GSVLTTVSQIDDSVLGKCGKFYEQQVGSERYNFFEDCSKAQACTLLLRGGAEQFIAETER 385
Query: 681 AVRDGLRAINNAIEDKCVIPGAAAFEIKLTR 773
++ D + + A ++ ++ G A E++L+R
Sbjct: 386 SLHDAIMIVRRAKKNDSIVAGGGAIEMELSR 416
Score = 30.7 bits (66), Expect = 1.2
Identities = 16/45 (35%), Positives = 26/45 (57%)
Frame = +1
Query: 382 VVINQKGIDPLSLDAFAKEGIIGLRRAKRRNMERLALACGGSVLT 516
VV+++ I ++ FA + R + +++RL ACGGSVLT
Sbjct: 286 VVLSKLPIGDVATQWFADRDMFCAGRIPQDDLDRLMSACGGSVLT 330
>Z49068-8|CAA88861.1| 540|Caenorhabditis elegans Hypothetical
protein K01C8.10 protein.
Length = 540
Score = 53.6 bits (123), Expect = 2e-07
Identities = 33/88 (37%), Positives = 49/88 (55%), Gaps = 2/88 (2%)
Frame = +3
Query: 510 VNSVDDLTEDALGFAGLVYEHVLGED-KFTFVEQCKNP-QSVTILIKGPNKHTLTQIKDA 683
V SVD DALG+A LV E G D K V +NP +V+IL++G NK L + +
Sbjct: 345 VASVDHFNADALGYADLVEEIPTGGDGKVIKVTGVQNPGHAVSILLRGSNKLVLEEADRS 404
Query: 684 VRDGLRAINNAIEDKCVIPGAAAFEIKL 767
+ D L I ++ K ++PG A E+++
Sbjct: 405 IHDALCVIRCLVKKKALLPGGGAPEMEI 432
Score = 31.5 bits (68), Expect = 0.71
Identities = 16/61 (26%), Positives = 31/61 (50%)
Frame = +2
Query: 71 VDLHMVEIMEMKHKTATETVLVKGLVMDHGARHPDMPKRVENAYILTCNVSLEYEKTEVN 250
V+L M++I++ T E+ L++G ++D P R+E A I + KT++
Sbjct: 202 VNLKMIKIIKKMGDTVEESELIEGALIDQKTMGRGAPTRIEKAKIGLIQFQISPPKTDME 261
Query: 251 S 253
+
Sbjct: 262 N 262
>U25697-1|AAA92842.1| 540|Caenorhabditis elegans CCT-4 protein.
Length = 540
Score = 53.6 bits (123), Expect = 2e-07
Identities = 33/88 (37%), Positives = 49/88 (55%), Gaps = 2/88 (2%)
Frame = +3
Query: 510 VNSVDDLTEDALGFAGLVYEHVLGED-KFTFVEQCKNP-QSVTILIKGPNKHTLTQIKDA 683
V SVD DALG+A LV E G D K V +NP +V+IL++G NK L + +
Sbjct: 345 VASVDHFNADALGYADLVEEIPTGGDGKVIKVTGVQNPGHAVSILLRGSNKLVLEEADRS 404
Query: 684 VRDGLRAINNAIEDKCVIPGAAAFEIKL 767
+ D L I ++ K ++PG A E+++
Sbjct: 405 IHDALCVIRCLVKKKALLPGGGAPEMEI 432
Score = 31.5 bits (68), Expect = 0.71
Identities = 16/61 (26%), Positives = 31/61 (50%)
Frame = +2
Query: 71 VDLHMVEIMEMKHKTATETVLVKGLVMDHGARHPDMPKRVENAYILTCNVSLEYEKTEVN 250
V+L M++I++ T E+ L++G ++D P R+E A I + KT++
Sbjct: 202 VNLKMIKIIKKMGDTVEESELIEGALIDQKTMGRGAPTRIEKAKIGLIQFQISPPKTDME 261
Query: 251 S 253
+
Sbjct: 262 N 262
>AC024136-4|AAF35963.3| 543|Caenorhabditis elegans Hypothetical
protein F54A3.3 protein.
Length = 543
Score = 49.6 bits (113), Expect = 3e-06
Identities = 31/123 (25%), Positives = 65/123 (52%), Gaps = 2/123 (1%)
Frame = +3
Query: 411 LVTGCFCQRRYYWTTQSKKAQYGTSSPSVRGVRV-NSVDDLTEDALGFAGLVYEHV-LGE 584
L G C RR T ++ A+ V G RV + DL ++ +G ++E V + +
Sbjct: 308 LKAGITCLRRLKKTDNNRLAR-------VCGARVVHDTSDLRDEDVGTKAQLFEVVKIAD 360
Query: 585 DKFTFVEQCKNPQSVTILIKGPNKHTLTQIKDAVRDGLRAINNAIEDKCVIPGAAAFEIK 764
+ +T+V + + T++++GP+K + +++ ++D L + N + + ++PG A E+
Sbjct: 361 EYYTYVT-AETTTACTVVLRGPSKDVINEVERNLQDSLHVVRNIMINPKLVPGGGALEMA 419
Query: 765 LTR 773
L+R
Sbjct: 420 LSR 422
Score = 40.7 bits (91), Expect = 0.001
Identities = 28/86 (32%), Positives = 38/86 (44%), Gaps = 2/86 (2%)
Frame = +1
Query: 262 YKSAEDREKLVAAEREFIDQRVRKIVALKKKLCDGTDKTF--VVINQKGIDPLSLDAFAK 435
YK E + L E I + + +K CD K +V +KGI L+ K
Sbjct: 250 YKKGESQTSLEIMREEDISAILEQEEQAIRKQCDEIIKLKPDLVFTEKGISDLAQHFLLK 309
Query: 436 EGIIGLRRAKRRNMERLALACGGSVL 513
GI LRR K+ + RLA CG V+
Sbjct: 310 AGITCLRRLKKTDNNRLARVCGARVV 335
Score = 36.7 bits (81), Expect = 0.019
Identities = 23/82 (28%), Positives = 43/82 (52%), Gaps = 4/82 (4%)
Frame = +2
Query: 11 DVLTDACVDAVLTIRTPG---KPVDL-HMVEIMEMKHKTATETVLVKGLVMDHGARHPDM 178
D+ + + AV TIR + +D+ I ++ ++ +VKG+V++ H M
Sbjct: 173 DLAVNISIQAVKTIRVEKAGVREIDIKRYCRIEKIPGGRIEDSQVVKGIVVNKDILHAKM 232
Query: 179 PKRVENAYILTCNVSLEYEKTE 244
+R+EN I+ + +LEY+K E
Sbjct: 233 RRRIENPRIVLLDCNLEYKKGE 254
>Z66500-12|CAA91308.1| 549|Caenorhabditis elegans Hypothetical
protein T05C12.7 protein.
Length = 549
Score = 38.3 bits (85), Expect = 0.006
Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Frame = +2
Query: 8 ADVLTDACVDAVLTIRTP--GKPV-DLHMVEIMEMKHKTATETVLVKGLVMDHGARHPDM 178
AD + VDA +R GK ++ V +++ K+A E+VLVKG ++ M
Sbjct: 169 ADFFGELVVDAAEAVRVENNGKVTYPINAVNVLKAHGKSARESVLVKGYALNCTVASQAM 228
Query: 179 PKRVENAYILTCNVSL 226
P RV+NA I + SL
Sbjct: 229 PLRVQNAKIACLDFSL 244
>U07941-1|AAB05072.1| 549|Caenorhabditis elegans CCT-1 protein.
Length = 549
Score = 38.3 bits (85), Expect = 0.006
Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Frame = +2
Query: 8 ADVLTDACVDAVLTIRTP--GKPV-DLHMVEIMEMKHKTATETVLVKGLVMDHGARHPDM 178
AD + VDA +R GK ++ V +++ K+A E+VLVKG ++ M
Sbjct: 169 ADFFGELVVDAAEAVRVENNGKVTYPINAVNVLKAHGKSARESVLVKGYALNCTVASQAM 228
Query: 179 PKRVENAYILTCNVSL 226
P RV+NA I + SL
Sbjct: 229 PLRVQNAKIACLDFSL 244
>AL021492-1|CAA16377.1| 179|Caenorhabditis elegans Hypothetical
protein Y45F10D.2 protein.
Length = 179
Score = 30.3 bits (65), Expect = 1.7
Identities = 17/74 (22%), Positives = 36/74 (48%)
Frame = +1
Query: 562 STNTYSEKTSLPLLNNARTHNLLPSSSRDPTSIP*HKSKMQFVTASALLITPLKINASYP 741
+++ S +S+ N + +P + TS+P + K Q V+ + +P+ ++ P
Sbjct: 83 ASSASSSASSMTPTGNGAQASTIPMNQGSSTSMP-VRQKRQAVSTTTTTASPMSTSSPTP 141
Query: 742 VLRPSKSS*HGTTE 783
+PS + +GT E
Sbjct: 142 SQQPSTTQPYGTDE 155
>U20861-4|AAA62296.3| 297|Caenorhabditis elegans Hypothetical
protein C28H8.8 protein.
Length = 297
Score = 29.5 bits (63), Expect = 2.9
Identities = 22/93 (23%), Positives = 44/93 (47%), Gaps = 9/93 (9%)
Frame = -3
Query: 441 TFFGKSIQ*QGVDSFLVDND----ESLVSTVA*FLFESNDLSYSLINKFPFSSN-----K 289
TFF K ++ +D FL+DN+ + L F+ N + +N ++ K
Sbjct: 191 TFFKKFVKESTIDQFLMDNEGPEYDILPMMARGAEFDQNGIVVCQMNTEVHQADDERKAK 250
Query: 288 LFSILSRLVEEAEFTSVFSYSNDTLHVRMYAFS 190
SI++ ++E+ + + +Y+ T+H R Y +
Sbjct: 251 FLSIMNTIIEDGRYAFMVAYA--TVHHRFYVIN 281
>Z68012-1|CAA92016.1| 304|Caenorhabditis elegans Hypothetical
protein T24D5.1 protein.
Length = 304
Score = 29.1 bits (62), Expect = 3.8
Identities = 9/25 (36%), Positives = 19/25 (76%)
Frame = +2
Query: 170 PDMPKRVENAYILTCNVSLEYEKTE 244
P++P++ ++ Y+L CN+++ EK E
Sbjct: 166 PEIPRKDQDGYLLECNLNIFLEKLE 190
>AL132876-6|CAC48121.2| 350|Caenorhabditis elegans Hypothetical
protein Y105E8A.6 protein.
Length = 350
Score = 29.1 bits (62), Expect = 3.8
Identities = 14/34 (41%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
Frame = +3
Query: 441 YYWTTQSKKAQ--YGTSSPSVRGVRVNSVDDLTE 536
Y WTT+S+ +Q +GT +PS G R++++ D E
Sbjct: 15 YQWTTESRSSQQRHGTGTPSQDG-RLSAIPDPVE 47
>AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical
protein C08G9.2 protein.
Length = 2224
Score = 29.1 bits (62), Expect = 3.8
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +1
Query: 103 ETQDCY*NCTCKRSSNGSWCTSPRYAKAC 189
+ DC+ C ++S G+ C++PR A AC
Sbjct: 1447 QDSDCHGFLKCCQASCGTMCSAPRIATAC 1475
>Z78542-3|CAB01745.2| 463|Caenorhabditis elegans Hypothetical
protein F20D1.3 protein.
Length = 463
Score = 28.3 bits (60), Expect = 6.7
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 6/60 (10%)
Frame = +3
Query: 549 FAGLVYEHVLGEDKFTFVEQCKNPQSVTILIKGPNKHTLTQIK------DAVRDGLRAIN 710
FAG + H G+ KF F +C +PQ + + + QI+ D +DGL N
Sbjct: 77 FAGEIPVHSPGKMKFLFALKCPSPQGGSAFVLVTEEEVYGQIRLNVSRIDLAQDGLSIAN 136
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,274,236
Number of Sequences: 27780
Number of extensions: 350544
Number of successful extensions: 1024
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 975
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1022
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1924757034
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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