Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00075
(806 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ... 155 7e-39
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p... 155 7e-39
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M... 135 6e-33
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc... 135 6e-33
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 124 1e-29
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch... 75 9e-15
SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces pombe... 65 1e-11
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom... 63 5e-11
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc... 29 1.0
SPBC32F12.01c ||SPBC685.10c|inositol phosphosphingolipid phospho... 27 2.4
SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ... 26 5.5
SPCC320.09 |hem15||ferrochelatase|Schizosaccharomyces pombe|chr ... 26 5.5
SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb... 26 5.5
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb... 26 7.2
SPBC2G2.12 |||histidine-tRNA ligase|Schizosaccharomyces pombe|ch... 26 7.2
SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces p... 25 9.6
SPBC25H2.05 |egd2|nac1|nascent polypeptide-associated complex al... 25 9.6
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |... 25 9.6
>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 644
Score = 155 bits (376), Expect = 7e-39
Identities = 72/90 (80%), Positives = 80/90 (88%)
Frame = +3
Query: 243 TKCTIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKD 422
T IFDLGGGTFDVS+LTIE+GIFEVK+TAGDTHLGGEDFD+R+VNHF QEFKRK KKD
Sbjct: 191 TNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDSRLVNHFAQEFKRKNKKD 250
Query: 423 LATNKRALRRLRTACERAKRTLSSSTQARL 512
+ N RA+RRLRTACERAKRTLSSS QA +
Sbjct: 251 ITGNARAVRRLRTACERAKRTLSSSAQASI 280
Score = 136 bits (328), Expect = 5e-33
Identities = 66/85 (77%), Positives = 74/85 (87%)
Frame = +1
Query: 1 KTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKDAGTISGLNVLR 180
KTF PEE+SSMVL KM+E+AEA+LG V +AV+TVPAYFNDSQRQATKDAG I+GLNVLR
Sbjct: 110 KTFTPEEISSMVLLKMRESAEAFLGGKVTDAVVTVPAYFNDSQRQATKDAGLIAGLNVLR 169
Query: 181 IINEPTAAAIAYGLDKKGTGERNVL 255
IINEPTAAAIAYGLD+ E NVL
Sbjct: 170 IINEPTAAAIAYGLDRSNQHETNVL 194
Score = 128 bits (310), Expect = 7e-31
Identities = 62/87 (71%), Positives = 75/87 (86%)
Frame = +2
Query: 503 SEIEIDSLFEGIDFYTSITRARFEELNADLFRSTMEPVEKSLRDAKMDKAQIHDIVLVGG 682
+ IEIDSL+EGIDFYTSITRARFEEL ADLFR+TMEPVEK LRD+K+DK+ +++IVLVGG
Sbjct: 278 ASIEIDSLYEGIDFYTSITRARFEELCADLFRNTMEPVEKVLRDSKIDKSSVNEIVLVGG 337
Query: 683 STRIPKVQKLLQDFLLMERSSTKSINP 763
STRIP++QKL+ DF + KSINP
Sbjct: 338 STRIPRIQKLVSDF-FNGKEPCKSINP 363
>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 647
Score = 155 bits (376), Expect = 7e-39
Identities = 71/86 (82%), Positives = 80/86 (93%)
Frame = +3
Query: 255 IFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLATN 434
IFDLGGGTFDVS+LTIE+GIFEVK+TAGDTHLGGEDFD+R+VNHF+QEFKRK KKD+ N
Sbjct: 195 IFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDSRLVNHFIQEFKRKNKKDITGN 254
Query: 435 KRALRRLRTACERAKRTLSSSTQARL 512
RA+RRLRTACERAKRTLSSS QA +
Sbjct: 255 ARAVRRLRTACERAKRTLSSSAQASI 280
Score = 142 bits (344), Expect = 5e-35
Identities = 69/85 (81%), Positives = 75/85 (88%)
Frame = +1
Query: 1 KTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKDAGTISGLNVLR 180
KTF PEE+SSMVL KM+ETAEAYLG V +AV+TVPAYFNDSQRQATKDAG I+GLNVLR
Sbjct: 110 KTFTPEEISSMVLMKMRETAEAYLGGKVTDAVVTVPAYFNDSQRQATKDAGLIAGLNVLR 169
Query: 181 IINEPTAAAIAYGLDKKGTGERNVL 255
IINEPTAAAIAYGLD+ GE NVL
Sbjct: 170 IINEPTAAAIAYGLDRSNQGESNVL 194
Score = 130 bits (313), Expect = 3e-31
Identities = 64/87 (73%), Positives = 74/87 (85%)
Frame = +2
Query: 503 SEIEIDSLFEGIDFYTSITRARFEELNADLFRSTMEPVEKSLRDAKMDKAQIHDIVLVGG 682
+ IEIDSLFEGIDFYTSITRARFEEL ADLFR TMEPVE+ LRD+K+DKA +++IVLVGG
Sbjct: 278 ASIEIDSLFEGIDFYTSITRARFEELCADLFRKTMEPVERVLRDSKVDKASVNEIVLVGG 337
Query: 683 STRIPKVQKLLQDFLLMERSSTKSINP 763
STRIP+VQKL+ DF + KSINP
Sbjct: 338 STRIPRVQKLVSDF-FNGKEPCKSINP 363
>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
1|||Manual
Length = 663
Score = 135 bits (327), Expect = 6e-33
Identities = 63/85 (74%), Positives = 78/85 (91%)
Frame = +1
Query: 1 KTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKDAGTISGLNVLR 180
K F PEE+S+M+L+KMK+TAEAYLGK V +AV+TVPAYFND+QRQATKDAGTI+GLNV+R
Sbjct: 143 KKFTPEEISAMILSKMKQTAEAYLGKPVTHAVVTVPAYFNDAQRQATKDAGTIAGLNVIR 202
Query: 181 IINEPTAAAIAYGLDKKGTGERNVL 255
I+NEPTAAAIAYGLDK T E++++
Sbjct: 203 IVNEPTAAAIAYGLDKTDT-EKHIV 226
Score = 107 bits (258), Expect = 1e-24
Identities = 45/86 (52%), Positives = 67/86 (77%)
Frame = +3
Query: 255 IFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLATN 434
++DLGGGTFDVS+L+I++G+FEV +T+GDTHLGGEDFDNR++N+ + + RK D+ +
Sbjct: 227 VYDLGGGTFDVSLLSIDNGVFEVLATSGDTHLGGEDFDNRVINYLARTYNRKNNVDVTKD 286
Query: 435 KRALRRLRTACERAKRTLSSSTQARL 512
+A+ +L+ E+AKRTLSS R+
Sbjct: 287 LKAMGKLKREVEKAKRTLSSQKSVRI 312
Score = 101 bits (243), Expect = 9e-23
Identities = 49/98 (50%), Positives = 71/98 (72%)
Frame = +2
Query: 470 EGKEDLVIVHTSEIEIDSLFEGIDFYTSITRARFEELNADLFRSTMEPVEKSLRDAKMDK 649
+ K L + IEI+S F G DF +++RA+FEE+N DLF+ T++PVE+ L+D+ + K
Sbjct: 299 KAKRTLSSQKSVRIEIESFFNGQDFSETLSRAKFEEINMDLFKKTLKPVEQVLKDSNLKK 358
Query: 650 AQIHDIVLVGGSTRIPKVQKLLQDFLLMERSSTKSINP 763
++I DIVLVGGSTRIPKVQ+LL+ F + ++K INP
Sbjct: 359 SEIDDIVLVGGSTRIPKVQELLESF--FGKKASKGINP 394
>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 135 bits (327), Expect = 6e-33
Identities = 62/83 (74%), Positives = 72/83 (86%)
Frame = +3
Query: 255 IFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLATN 434
IFDLGGGTFDVS+L I+ G+FEV +TAGDTHLGGEDFDN +V HF+QEFKRK K D++ +
Sbjct: 199 IFDLGGGTFDVSLLKIQGGVFEVLATAGDTHLGGEDFDNALVEHFIQEFKRKQKIDISDD 258
Query: 435 KRALRRLRTACERAKRTLSSSTQ 503
RALRRLR+ACERAKR LSS TQ
Sbjct: 259 PRALRRLRSACERAKRALSSVTQ 281
Score = 124 bits (300), Expect = 1e-29
Identities = 62/85 (72%), Positives = 70/85 (82%)
Frame = +1
Query: 1 KTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKDAGTISGLNVLR 180
K F +E+S+MVLTKMKE +EA L K V+ AVITVPAYF+DSQR ATKDAG I+GLNVLR
Sbjct: 114 KQFTAQEISAMVLTKMKEISEAKLNKRVEKAVITVPAYFSDSQRAATKDAGAIAGLNVLR 173
Query: 181 IINEPTAAAIAYGLDKKGTGERNVL 255
IINEPTAAAIAYGLD K +NVL
Sbjct: 174 IINEPTAAAIAYGLDAKSDKPKNVL 198
Score = 113 bits (272), Expect = 3e-26
Identities = 56/96 (58%), Positives = 73/96 (76%)
Frame = +2
Query: 476 KEDLVIVHTSEIEIDSLFEGIDFYTSITRARFEELNADLFRSTMEPVEKSLRDAKMDKAQ 655
K L V + +E+DSL GIDF +SITRARFE++NA F++T++PV K L+D+K+ KA
Sbjct: 273 KRALSSVTQTTVEVDSLSNGIDFSSSITRARFEDINATTFKATIDPVAKVLKDSKVPKAD 332
Query: 656 IHDIVLVGGSTRIPKVQKLLQDFLLMERSSTKSINP 763
+HDIVLVGGSTRIPKVQ+L+ DF R+ KSINP
Sbjct: 333 VHDIVLVGGSTRIPKVQRLVSDF-FDGRALNKSINP 367
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 124 bits (300), Expect = 1e-29
Identities = 55/77 (71%), Positives = 67/77 (87%)
Frame = +1
Query: 1 KTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKDAGTISGLNVLR 180
KT+ P ++ +L+KM+ETA YLGK V+NAV+TVPAYFNDSQRQATK AG I+GLNVLR
Sbjct: 156 KTYSPSQIGGFILSKMRETASTYLGKDVKNAVVTVPAYFNDSQRQATKAAGAIAGLNVLR 215
Query: 181 IINEPTAAAIAYGLDKK 231
++NEPTAAA+AYGLDKK
Sbjct: 216 VVNEPTAAALAYGLDKK 232
Score = 103 bits (246), Expect = 4e-23
Identities = 46/80 (57%), Positives = 62/80 (77%)
Frame = +3
Query: 255 IFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLATN 434
+FDLGGGTFD+SIL + +G+FEV+ST GDTHLGGEDFD +V H V+ FK+ DL+ +
Sbjct: 239 VFDLGGGTFDISILELNNGVFEVRSTNGDTHLGGEDFDVALVRHIVETFKKNEGLDLSKD 298
Query: 435 KRALRRLRTACERAKRTLSS 494
+ A++R+R A E+AK LSS
Sbjct: 299 RLAVQRIREAAEKAKCELSS 318
Score = 62.5 bits (145), Expect = 7e-11
Identities = 27/70 (38%), Positives = 51/70 (72%)
Frame = +2
Query: 554 ITRARFEELNADLFRSTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFLLM 733
I+RA+FE+L L R T++P +++L+DA + ++I++++LVGG TR+P+V + ++ +
Sbjct: 343 ISRAQFEKLVDPLVRRTIDPCKRALKDANLQTSEINEVILVGGMTRMPRVVETVKS--IF 400
Query: 734 ERSSTKSINP 763
+R KS+NP
Sbjct: 401 KREPAKSVNP 410
>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
Pss1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 75.4 bits (177), Expect = 9e-15
Identities = 36/89 (40%), Positives = 52/89 (58%)
Frame = +3
Query: 246 KCTIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDL 425
+ I D G + VSI+ G F +KST D +LG + D ++++F EFK KYK D+
Sbjct: 200 RVAIVDFGHSNYSVSIVEFSRGQFHIKSTVCDRNLGSRNMDKALIDYFAAEFKEKYKIDV 259
Query: 426 ATNKRALRRLRTACERAKRTLSSSTQARL 512
+N +A RL TA ER K+ LS++ A L
Sbjct: 260 LSNPKATFRLATAVERLKKVLSANANAPL 288
Score = 65.3 bits (152), Expect = 1e-11
Identities = 31/63 (49%), Positives = 45/63 (71%)
Frame = +1
Query: 40 TKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYG 219
TK+K AEA L +V + VI++PA+F D QR+A +A I+GLN LR++N+ AAA+ YG
Sbjct: 127 TKIKAIAEAELIGSVSDVVISIPAWFTDIQRRALLEAANIAGLNPLRLMNDNAAAALTYG 186
Query: 220 LDK 228
+ K
Sbjct: 187 ITK 189
Score = 49.6 bits (113), Expect = 5e-07
Identities = 23/72 (31%), Positives = 42/72 (58%)
Frame = +2
Query: 509 IEIDSLFEGIDFYTSITRARFEELNADLFRSTMEPVEKSLRDAKMDKAQIHDIVLVGGST 688
+ ++ + ID + I R+ FEEL L P+EK+L A + K ++ I +VGG T
Sbjct: 288 LNVEMIMNDIDASSFIKRSDFEELIKPLLERLTPPIEKALELAGIKKEDLYSIEMVGGCT 347
Query: 689 RIPKVQKLLQDF 724
R+P V++++ ++
Sbjct: 348 RVPIVKEVIANY 359
>SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 848
Score = 64.9 bits (151), Expect = 1e-11
Identities = 31/82 (37%), Positives = 54/82 (65%)
Frame = +2
Query: 515 IDSLFEGIDFYTSITRARFEELNADLFRSTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRI 694
I+ L +GIDF ITR+ E L D+ + +EP+ K+L+ A + ++I+ I+L GG++RI
Sbjct: 318 IEELADGIDFRLKITRSVLESLCKDMEDAAVEPINKALKKANLTFSEINSIILFGGASRI 377
Query: 695 PKVQKLLQDFLLMERSSTKSIN 760
P +Q L D++ ++ S K++N
Sbjct: 378 PFIQSTLADYVSSDKIS-KNVN 398
Score = 45.6 bits (103), Expect = 8e-06
Identities = 23/71 (32%), Positives = 38/71 (53%)
Frame = +1
Query: 16 EEVSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKDAGTISGLNVLRIINEP 195
EE+ +M + AE + + + V+TVP +FN+ QR +A I +VL +I++
Sbjct: 138 EEIIAMTMEHYISLAEEMAHEKITDLVLTVPPHFNELQRSILLEAARILNKHVLALIDDN 197
Query: 196 TAAAIAYGLDK 228
A AI Y L +
Sbjct: 198 VAVAIEYSLSR 208
>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 566
Score = 62.9 bits (146), Expect = 5e-11
Identities = 29/84 (34%), Positives = 50/84 (59%)
Frame = +3
Query: 255 IFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLATN 434
+ + G +VS+++++ G+ + ++ D +LGGE + +VN F +EF++K D N
Sbjct: 221 VANFGATRSEVSVVSVKGGLMTILASVHDENLGGEQLTDVLVNFFAKEFEKKNGIDPRKN 280
Query: 435 KRALRRLRTACERAKRTLSSSTQA 506
R+L +LR CE KR LS+ T A
Sbjct: 281 ARSLAKLRAQCEITKRVLSNGTTA 304
Score = 58.0 bits (134), Expect = 1e-09
Identities = 28/71 (39%), Positives = 43/71 (60%)
Frame = +1
Query: 1 KTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKDAGTISGLNVLR 180
K E S L ++ E+AE +LG V V++VP YF D+QR+A + A +GL VL+
Sbjct: 136 KILTAHEASVRHLRRLTESAEDFLGTKVNGCVMSVPVYFTDAQRKALESAANEAGLPVLQ 195
Query: 181 IINEPTAAAIA 213
+I++P A +A
Sbjct: 196 LIHDPAAVILA 206
Score = 52.4 bits (120), Expect = 7e-08
Identities = 25/91 (27%), Positives = 51/91 (56%)
Frame = +2
Query: 500 TSEIEIDSLFEGIDFYTSITRARFEELNADLFRSTMEPVEKSLRDAKMDKAQIHDIVLVG 679
T+ +DSL +GIDF++SI R R++ + + V +++ A M+ I +++L G
Sbjct: 303 TASAAVDSLADGIDFHSSINRLRYDLAASATLNRMADLVTEAVEKANMEPFDISEVILAG 362
Query: 680 GSTRIPKVQKLLQDFLLMERSSTKSINPTRP 772
G++ PK+ L++ + E++ +S + P
Sbjct: 363 GASNTPKLTSLMES-IFPEQTIIRSSSSVTP 392
>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1238
Score = 28.7 bits (61), Expect = 1.0
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = -2
Query: 367 SKSSPPKWVSPAVDFTSKIPSSMVRMDTSKVPPPRSK 257
+KSSP K VSP V SK +S V + S +P +K
Sbjct: 203 NKSSPVKHVSPNVKNNSKKTASSVNSNHSSIPSSITK 239
>SPBC32F12.01c ||SPBC685.10c|inositol phosphosphingolipid
phospholipase C |Schizosaccharomyces pombe|chr
2|||Manual
Length = 424
Score = 27.5 bits (58), Expect = 2.4
Identities = 14/26 (53%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Frame = +1
Query: 679 WLHSYPQGAEAPA-RFSFNGKELNKI 753
WL YP E P RFS N KEL +I
Sbjct: 202 WLSVYPDQVEHPPNRFSMNDKELVEI 227
>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 932
Score = 26.2 bits (55), Expect = 5.5
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -1
Query: 662 RGFEPYPSWHHGETSPLAP 606
+ +P P+ HG+TSPL+P
Sbjct: 420 KAIKPMPTSIHGQTSPLSP 438
>SPCC320.09 |hem15||ferrochelatase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 384
Score = 26.2 bits (55), Expect = 5.5
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -2
Query: 403 LNSWTKWLTMRLSKSSPPKWVSPAVDF 323
LN K++ SK P W+SPA DF
Sbjct: 256 LNYKNKFVNAWQSKVGPLPWMSPATDF 282
>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 368
Score = 26.2 bits (55), Expect = 5.5
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 6/65 (9%)
Frame = +1
Query: 223 DKKGTGERNVLS----LTSAAVPSTCPSLPSRMVSSR*NPPPATPTWEVR--TLTIAWST 384
D K GE N+ + + P T S P S NPP + P +V + T+A ST
Sbjct: 53 DDKTVGEYNIKEQDFIVCMVSRPKTSTSTPKSAASPAPNPPASVPEKKVEAPSSTVAEST 112
Query: 385 TLSRS 399
+ +++
Sbjct: 113 STTQT 117
>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1207
Score = 25.8 bits (54), Expect = 7.2
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = +3
Query: 195 DCCCDCLRS*QKGYWRTKCTIFDLGG 272
D C C KGY CT+ D+GG
Sbjct: 1170 DVCSVCGAVYHKGYVNEVCTVCDVGG 1195
>SPBC2G2.12 |||histidine-tRNA ligase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 538
Score = 25.8 bits (54), Expect = 7.2
Identities = 17/53 (32%), Positives = 27/53 (50%)
Frame = +2
Query: 521 SLFEGIDFYTSITRARFEELNADLFRSTMEPVEKSLRDAKMDKAQIHDIVLVG 679
SL G+D+YT I E +A +S+ E +K D + D++ D + VG
Sbjct: 331 SLARGLDYYTGIIYEAVTEASAPKIKSSAE--KKKSADPEADRSN-DDSIGVG 380
>SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 591
Score = 25.4 bits (53), Expect = 9.6
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Frame = +3
Query: 588 ICSGLPWSQ----WRSLSVMPRWIRLKSTILYWW 677
ICS LP + W + S PR+ R S ++ WW
Sbjct: 133 ICSALPAAGSIYLWAAESAGPRFGRFVSFLVAWW 166
>SPBC25H2.05 |egd2|nac1|nascent polypeptide-associated complex alpha
subunit Egd2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 173
Score = 25.4 bits (53), Expect = 9.6
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +1
Query: 22 VSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATK 144
++ ++ K A LGK + FN+SQ+QAT+
Sbjct: 57 INEPIVYKSSNNAYIVLGKVTVEDMAAQARAFNESQKQATE 97
>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 638
Score = 25.4 bits (53), Expect = 9.6
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +1
Query: 271 AVPSTCPSLPSRMVSSR*NPPPATPTW 351
++PST P++PS +S + PP T ++
Sbjct: 299 SIPSTIPTIPSAYSASVSSQPPLTHSY 325
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,490,890
Number of Sequences: 5004
Number of extensions: 75943
Number of successful extensions: 289
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 255
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 289
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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