Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00074
         (716 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|c...    27   2.0  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    27   2.7  
SPBC23G7.16 |ctr6||vacuolar copper transporter Ctr6 |Schizosacch...    25   8.2  
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual    25   8.2  

>SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +1

Query: 469 VYLYITRYVGSYYSVLFEKTYNAFSITRNQSIVL 570
           ++LY+ RY  S  SV F    +  ++  NQS VL
Sbjct: 507 IHLYVHRYAASISSVPFSHVKSPPTVFENQSAVL 540


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 15/53 (28%), Positives = 25/53 (47%)
 Frame = -3

Query: 711  LKNGFINIHIQSTFPKLKNPYNKYFSLFLTKNKKNTLYFFTNAVIPLQHYRLV 553
            LKNG   +   S  PKL++ Y K++S     +  NTL F    +  +  +  +
Sbjct: 2800 LKNGLEFLDFASLRPKLESLYKKFYS----SHPNNTLVFVDETITHILRFHRI 2848


>SPBC23G7.16 |ctr6||vacuolar copper transporter Ctr6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 148

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 463 KIVYLYITRYVGSYYSVLFEKTYNAFSI 546
           ++  LY  + V SY+ +L   TYNA+ I
Sbjct: 95  RLCALYAVQLVFSYFLMLVAMTYNAYVI 122


>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1339

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -2

Query: 526 FSRITRCNMIPHNALYTNILFFIFQYKKILFIY 428
           F R++    IP N    NI+  I Q  ++LF+Y
Sbjct: 746 FERVSISAEIPSNIRKANIMIPILQNVQMLFVY 778


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,850,483
Number of Sequences: 5004
Number of extensions: 60349
Number of successful extensions: 139
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)