Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00074
         (716 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY705402-1|AAU12511.1|  509|Anopheles gambiae nicotinic acetylch...    23   7.2  
AJ441131-5|CAD29634.1|  574|Anopheles gambiae putative Na+ chann...    23   7.2  
AJ439398-4|CAD28127.1|  572|Anopheles gambiae putative sodium ch...    23   7.2  
AY705401-1|AAU12510.1|  490|Anopheles gambiae nicotinic acetylch...    23   9.5  
AY705400-1|AAU12509.1|  490|Anopheles gambiae nicotinic acetylch...    23   9.5  

>AY705402-1|AAU12511.1|  509|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 7 protein.
          Length = 509

 Score = 23.4 bits (48), Expect = 7.2
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -2

Query: 511 RCNMIPHNALYTNILF 464
           RCN +PHN  Y   ++
Sbjct: 380 RCNTLPHNPTYYRTVY 395


>AJ441131-5|CAD29634.1|  574|Anopheles gambiae putative Na+ channel
           protein.
          Length = 574

 Score = 23.4 bits (48), Expect = 7.2
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +3

Query: 372 FFIVYLFFLACNVYCVPN 425
           FF+ +L   AC++Y + N
Sbjct: 64  FFLTFLVVTACSIYFISN 81


>AJ439398-4|CAD28127.1|  572|Anopheles gambiae putative sodium
           channel protein.
          Length = 572

 Score = 23.4 bits (48), Expect = 7.2
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +3

Query: 372 FFIVYLFFLACNVYCVPN 425
           FF+ +L   AC++Y + N
Sbjct: 64  FFLTFLVVTACSIYFISN 81


>AY705401-1|AAU12510.1|  490|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 6 protein.
          Length = 490

 Score = 23.0 bits (47), Expect = 9.5
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = -3

Query: 630 FLTKNKKNTLYFFTNAVIP 574
           F  + ++ TLY+F N ++P
Sbjct: 223 FTIQIRRRTLYYFFNLIVP 241


>AY705400-1|AAU12509.1|  490|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 6 protein.
          Length = 490

 Score = 23.0 bits (47), Expect = 9.5
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = -3

Query: 630 FLTKNKKNTLYFFTNAVIP 574
           F  + ++ TLY+F N ++P
Sbjct: 223 FTIQIRRRTLYYFFNLIVP 241


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 704,034
Number of Sequences: 2352
Number of extensions: 13872
Number of successful extensions: 26
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 72765525
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)