Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00074
         (716 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016424-5|AAB65326.1|  282|Caenorhabditis elegans Hypothetical ...    29   4.4  
Z81584-1|CAB04679.1|  217|Caenorhabditis elegans Hypothetical pr...    28   7.7  
AL132898-8|CAB60959.1|  297|Caenorhabditis elegans Hypothetical ...    28   7.7  

>AF016424-5|AAB65326.1|  282|Caenorhabditis elegans Hypothetical
           protein F39G3.4 protein.
          Length = 282

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
 Frame = +3

Query: 123 YQMIPHFNSISNIFGNCTLLMRKGDMY--FCTVKF--TYNDLGSS*LIRVPLHICVNCLV 290
           Y    HF++I +  G C LL+  G +   FCT  F  T  D  S  L+ V   + ++C+V
Sbjct: 157 YTGASHFSNIHSYLGVCLLLVYSGQLSFGFCTYLFKCTPKDYQSR-LMPVHRAVGISCMV 215

Query: 291 I 293
           +
Sbjct: 216 V 216


>Z81584-1|CAB04679.1|  217|Caenorhabditis elegans Hypothetical
           protein T04C12.1 protein.
          Length = 217

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 378 IVYLFFLACNVYCVPN**INSI 443
           +++L F ACN +C PN   N+I
Sbjct: 94  VIFLLFAACNSFCHPNSLTNTI 115


>AL132898-8|CAB60959.1|  297|Caenorhabditis elegans Hypothetical
           protein Y59A8B.11 protein.
          Length = 297

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -1

Query: 212 STEIHIAFSH*KCTISKNIRN 150
           ST IH  FSH  CT++ N RN
Sbjct: 63  STVIHYDFSHSHCTVNYNDRN 83


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,442,263
Number of Sequences: 27780
Number of extensions: 329095
Number of successful extensions: 682
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 682
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)