Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00074
(716 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY736135-1|AAU84701.1| 253|Apis mellifera take-out-like carrier... 25 0.71
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.9
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.9
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.9
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.9
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.9
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.9
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 23 2.9
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 23 2.9
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 23 3.8
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot... 22 5.0
EF589162-1|ABQ84439.1| 686|Apis mellifera hexamerin 70c protein. 22 5.0
>AY736135-1|AAU84701.1| 253|Apis mellifera take-out-like carrier
protein JHBP-1 protein.
Length = 253
Score = 25.0 bits (52), Expect = 0.71
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -3
Query: 705 NGFINIHIQSTFPKLKNPYNKYFSLFLTK 619
N FIN + + F +L+ Y + FSL TK
Sbjct: 207 NRFINENSELLFKELQAAYEETFSLVFTK 235
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 23.0 bits (47), Expect = 2.9
Identities = 7/19 (36%), Positives = 13/19 (68%)
Frame = -3
Query: 630 FLTKNKKNTLYFFTNAVIP 574
F + ++ TLY+F N ++P
Sbjct: 186 FTIQIRRRTLYYFFNLIVP 204
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 23.0 bits (47), Expect = 2.9
Identities = 7/19 (36%), Positives = 13/19 (68%)
Frame = -3
Query: 630 FLTKNKKNTLYFFTNAVIP 574
F + ++ TLY+F N ++P
Sbjct: 186 FTIQIRRRTLYYFFNLIVP 204
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 23.0 bits (47), Expect = 2.9
Identities = 7/19 (36%), Positives = 13/19 (68%)
Frame = -3
Query: 630 FLTKNKKNTLYFFTNAVIP 574
F + ++ TLY+F N ++P
Sbjct: 186 FTIQIRRRTLYYFFNLIVP 204
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 23.0 bits (47), Expect = 2.9
Identities = 7/19 (36%), Positives = 13/19 (68%)
Frame = -3
Query: 630 FLTKNKKNTLYFFTNAVIP 574
F + ++ TLY+F N ++P
Sbjct: 186 FTIQIRRRTLYYFFNLIVP 204
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 23.0 bits (47), Expect = 2.9
Identities = 7/19 (36%), Positives = 13/19 (68%)
Frame = -3
Query: 630 FLTKNKKNTLYFFTNAVIP 574
F + ++ TLY+F N ++P
Sbjct: 186 FTIQIRRRTLYYFFNLIVP 204
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 23.0 bits (47), Expect = 2.9
Identities = 7/19 (36%), Positives = 13/19 (68%)
Frame = -3
Query: 630 FLTKNKKNTLYFFTNAVIP 574
F + ++ TLY+F N ++P
Sbjct: 186 FTIQIRRRTLYYFFNLIVP 204
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 23.0 bits (47), Expect = 2.9
Identities = 7/19 (36%), Positives = 13/19 (68%)
Frame = -3
Query: 630 FLTKNKKNTLYFFTNAVIP 574
F + ++ TLY+F N ++P
Sbjct: 254 FTIQIRRRTLYYFFNLIVP 272
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 23.0 bits (47), Expect = 2.9
Identities = 7/19 (36%), Positives = 13/19 (68%)
Frame = -3
Query: 630 FLTKNKKNTLYFFTNAVIP 574
F + ++ TLY+F N ++P
Sbjct: 254 FTIQIRRRTLYYFFNLIVP 272
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 22.6 bits (46), Expect = 3.8
Identities = 7/19 (36%), Positives = 13/19 (68%)
Frame = -3
Query: 630 FLTKNKKNTLYFFTNAVIP 574
F+ ++ TLY+F N ++P
Sbjct: 223 FVVIIRRRTLYYFFNLIVP 241
>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
protein.
Length = 1010
Score = 22.2 bits (45), Expect = 5.0
Identities = 7/27 (25%), Positives = 16/27 (59%)
Frame = +3
Query: 510 RVIRENLQRVFYNAEPIYSVVGGLLRL 590
+ +++ + +Y +PI V+GG + L
Sbjct: 942 QTVQDQIVSEYYQNKPISEVIGGAISL 968
>EF589162-1|ABQ84439.1| 686|Apis mellifera hexamerin 70c protein.
Length = 686
Score = 22.2 bits (45), Expect = 5.0
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -2
Query: 484 LYTNILFFIFQYKKI 440
LY NIL + +YKK+
Sbjct: 423 LYQNILSYFLRYKKL 437
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,553
Number of Sequences: 438
Number of extensions: 4398
Number of successful extensions: 15
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -