Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00073
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11B10.04c |mrps28||mitochondrial ribosomal protein subunit S...    41   1e-04
SPCC31H12.02c |mug73||membrane transporter |Schizosaccharomyces ...    30   0.18 
SPCC191.08 |||DUF1715 family protein|Schizosaccharomyces pombe|c...    28   0.97 
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch...    28   0.97 
SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces...    27   2.2  
SPBC1709.06 |dus2||tRNA dihydrouridine synthase Dus2 |Schizosacc...    25   5.2  
SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7 |Schizos...    25   6.8  
SPAC3A12.18 |zwf1|SPAC9.01|glucose-6-phosphate 1-dehydrogenase |...    25   6.8  
SPAC9.13c |cwf16|SPAPJ735.01c|splicing factor |Schizosaccharomyc...    25   6.8  
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    25   9.0  
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac...    25   9.0  

>SPBC11B10.04c |mrps28||mitochondrial ribosomal protein subunit
           S28|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 288

 Score = 41.1 bits (92), Expect = 1e-04
 Identities = 22/85 (25%), Positives = 45/85 (52%)
 Frame = +1

Query: 256 ESVKKIFSVAHLGQKEFHTLVKKELVNRVKRHQYDENSAENKIARLTAYIRCIQNIMEKN 435
           ES+ +IF++ +   K      K+  V    R++ D  S E + A  T+ I  + +  + +
Sbjct: 177 ESIHRIFNIENSNSKTLRLNNKQLAVESFARNERDTGSPEVQAAVYTSRILALSDHCKNH 236

Query: 436 PRNSKMKRTVQEMIDRRKKLLKYLR 510
            ++   KR ++  + +R+++LKYLR
Sbjct: 237 KKDQTGKRMLRYYVHQRQRMLKYLR 261


>SPCC31H12.02c |mug73||membrane transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 306

 Score = 30.3 bits (65), Expect = 0.18
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = +3

Query: 183 KAYHPFLRILSLISML*AKKSRMLRIGKKNIFCGTSWTKRIS 308
           + YH F  ILSL+S L A  +     G KN+F   S+ + +S
Sbjct: 54  QTYHRFFSILSLVSCL-AYFTMACNYGLKNVFSSASFFREVS 94


>SPCC191.08 |||DUF1715 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 134

 Score = 27.9 bits (59), Expect = 0.97
 Identities = 19/73 (26%), Positives = 37/73 (50%)
 Frame = +1

Query: 244 QGCSESVKKIFSVAHLGQKEFHTLVKKELVNRVKRHQYDENSAENKIARLTAYIRCIQNI 423
           QG  E+   +F + H   K    L+  E+  RV     +ENS   KI +   ++  ++++
Sbjct: 28  QGYEEAF--LFGLEHAYNKY---LLAGEIYGRVCFWLKEENSQHPKIKKAHRHLEQLKSL 82

Query: 424 MEKNPRNSKMKRT 462
           +E  P N++++ T
Sbjct: 83  LESLPTNNELEET 95


>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
           Zds1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 938

 Score = 27.9 bits (59), Expect = 0.97
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +2

Query: 149 PAYKPEKSGDLEGLPPIPENSIADIYALSEEIKD 250
           P  KPEKS   +  PP+PEN   D   L   + +
Sbjct: 450 PENKPEKSSTSK--PPVPENKAEDSVVLKSSVPE 481


>SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 995

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = -1

Query: 413 IQRMYAVNLAILFSAEFSSY*CLFTLFTSSFLTNV*NSFCPRC-ATENIFFT 261
           I RM + NLA LF + F    C FT   + F T   ++  P   ATE+IF T
Sbjct: 3   IHRMKS-NLASLFLSFFLLLACEFTFSYADFSTTTSDATHPSATATEDIFST 53


>SPBC1709.06 |dus2||tRNA dihydrouridine synthase Dus2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 479

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = -2

Query: 388 LQSYFQLSFHHTDASSLCLLVLS*PMCEILFVQDVPQKIFFLPILSIL 245
           L+  F++ + H+DASS+C  +       I FV D+P  +  L   +IL
Sbjct: 313 LKKAFEIEYKHSDASSVCPTLEKEKSLVISFV-DLPSFLESLLASNIL 359


>SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 721

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +2

Query: 365 TQLKIRLQD*LHTFVVY-KTSWKKTLGTQK*SELYK 469
           TQ+  RL   L  +  Y + SW K LGT++  EL K
Sbjct: 287 TQILDRLNWILEKYFTYLRPSWLKKLGTRRAYELIK 322


>SPAC3A12.18 |zwf1|SPAC9.01|glucose-6-phosphate 1-dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 500

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +1

Query: 265 KKIFSVAH-LGQKEFHTLVKKELVNRVKRHQYDENS 369
           K+I+ + H LG++    LV     N V  H +D+NS
Sbjct: 178 KEIYRIDHYLGKEMVQNLVHLRFCNPVISHLWDKNS 213


>SPAC9.13c |cwf16|SPAPJ735.01c|splicing factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -1

Query: 296 CPRCATENIFFTDSEH 249
           C RCA E  F TD +H
Sbjct: 84  CTRCAAEITFITDPKH 99


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
           Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
 Frame = +1

Query: 361 ENSA--ENKIARLTAYIRCIQNIME 429
           +NSA  EN I  L AY +CI NI++
Sbjct: 596 DNSAFTENDIPTLGAYWQCIWNILD 620


>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
           Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 815

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +2

Query: 128 WVRPEYVPAYKPEKSGDL 181
           +++P +V AY+P + GDL
Sbjct: 154 YLKPYFVEAYRPIRKGDL 171


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,160,304
Number of Sequences: 5004
Number of extensions: 44589
Number of successful extensions: 133
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)