Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00073
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0541 - 3874476-3874694,3874816-3874868,3875944-3876055,387... 48 3e-06
06_01_0531 - 3836420-3836638,3836760-3836812,3837888-3837999,383... 48 3e-06
02_05_1120 + 34257504-34258294,34258483-34258571,34258616-342587... 40 0.001
04_04_0917 - 29404341-29404519,29404610-29404744,29404898-294052... 29 3.0
01_05_0117 - 18300157-18301106,18301149-18301543,18302592-183026... 28 4.0
06_03_1130 - 27826384-27827039,27827800-27828031,27828120-278284... 28 5.2
04_03_0833 + 20147242-20147849,20147937-20148081,20148157-201482... 27 6.9
12_02_0590 - 20853040-20853081,20853694-20853918,20854995-208558... 27 9.1
12_02_0349 - 17820352-17821238,17822976-17823363 27 9.1
01_05_0743 + 24835349-24836009,24836925-24837068,24837154-248373... 27 9.1
>06_01_0541 -
3874476-3874694,3874816-3874868,3875944-3876055,
3876143-3876321,3876358-3877195
Length = 466
Score = 48.4 bits (110), Expect = 3e-06
Identities = 28/87 (32%), Positives = 47/87 (54%)
Frame = +1
Query: 256 ESVKKIFSVAHLGQKEFHTLVKKELVNRVKRHQYDENSAENKIARLTAYIRCIQNIMEKN 435
E V++ F H+ E + + + K + D SA ++A+LT I+ + + K
Sbjct: 335 ELVERYFHPDHMSSAEKMKQELQSVRDEFKMSENDCGSARVQVAQLTTKIKHLSTTLHKK 394
Query: 436 PRNSKMKRTVQEMIDRRKKLLKYLRST 516
++S+ + +QEM+ RRKK LKYLR T
Sbjct: 395 DKHSR--KGLQEMVQRRKKYLKYLRRT 419
>06_01_0531 -
3836420-3836638,3836760-3836812,3837888-3837999,
3838087-3838265,3838302-3839139
Length = 466
Score = 48.4 bits (110), Expect = 3e-06
Identities = 28/87 (32%), Positives = 47/87 (54%)
Frame = +1
Query: 256 ESVKKIFSVAHLGQKEFHTLVKKELVNRVKRHQYDENSAENKIARLTAYIRCIQNIMEKN 435
E V++ F H+ E + + + K + D SA ++A+LT I+ + + K
Sbjct: 335 ELVERYFHPDHMSSAEKMKQELQSVRDEFKMSENDCGSARVQVAQLTTKIKHLSTTLHKK 394
Query: 436 PRNSKMKRTVQEMIDRRKKLLKYLRST 516
++S+ + +QEM+ RRKK LKYLR T
Sbjct: 395 DKHSR--KGLQEMVQRRKKYLKYLRRT 419
>02_05_1120 +
34257504-34258294,34258483-34258571,34258616-34258713,
34259269-34259292,34259314-34259404,34259761-34259813,
34259933-34260151
Length = 454
Score = 39.9 bits (89), Expect = 0.001
Identities = 18/45 (40%), Positives = 31/45 (68%)
Frame = +1
Query: 382 IARLTAYIRCIQNIMEKNPRNSKMKRTVQEMIDRRKKLLKYLRST 516
+A+LT I+ + ++ K ++S+ + +Q+M+ RRKK LKYLR T
Sbjct: 365 VAQLTVKIKHLSTVLHKKDKHSR--KGLQDMVQRRKKYLKYLRRT 407
>04_04_0917 -
29404341-29404519,29404610-29404744,29404898-29405225,
29405313-29405532,29405653-29406647,29407233-29407493,
29407534-29407872,29409309-29409497
Length = 881
Score = 28.7 bits (61), Expect = 3.0
Identities = 19/66 (28%), Positives = 35/66 (53%)
Frame = +1
Query: 322 KELVNRVKRHQYDENSAENKIARLTAYIRCIQNIMEKNPRNSKMKRTVQEMIDRRKKLLK 501
KE +R+ +Y N +++ +Y CI+ + +PRNS +R+ Q M++ +L+K
Sbjct: 482 KEEASRLLPFKYYLKDGYNNLSQNLSY--CIEILYNNHPRNSGTERSFQCMLE-VLELIK 538
Query: 502 YLRSTI 519
L I
Sbjct: 539 ILHGMI 544
>01_05_0117 -
18300157-18301106,18301149-18301543,18302592-18302681,
18303723-18303836,18303903-18304046,18316147-18316312,
18316396-18317130,18317219-18317422,18317496-18318177,
18318272-18318528,18318604-18319298,18319345-18319382,
18319847-18319928,18320018-18320112,18320443-18320526,
18320601-18320891,18321521-18321853,18321948-18322150,
18322243-18322399,18322482-18322585,18322675-18322835,
18323511-18323824,18324317-18324589,18324666-18324967,
18325459-18325549,18326140-18326190,18326700-18326768,
18326926-18327017,18327082-18327148,18328582-18328746,
18329027-18329103,18329572-18329766,18330208-18330275,
18331081-18331172,18331399-18331522,18331608-18331705,
18332384-18332997,18333620-18333626
Length = 2892
Score = 28.3 bits (60), Expect = 4.0
Identities = 17/35 (48%), Positives = 20/35 (57%)
Frame = -2
Query: 361 HHTDASSLCLLVLS*PMCEILFVQDVPQKIFFLPI 257
HH +A LCLL L C I F+ D P +F LPI
Sbjct: 519 HHLNAIGLCLLSLLVYYC-INFLSDSPM-LFLLPI 551
>06_03_1130 - 27826384-27827039,27827800-27828031,27828120-27828491,
27829243-27829449,27829611-27829704,27829806-27829870,
27829946-27830398,27830467-27830760,27830837-27831295,
27831367-27831588,27831755-27831968,27832039-27832494,
27833280-27833389,27833468-27833644,27833758-27833979,
27834048-27834167,27834274-27834383,27834552-27834607,
27835252-27835440,27835602-27835775,27836066-27836281,
27837066-27837106,27837971-27837986,27838330-27838415,
27838737-27838910,27839093-27839149,27839720-27840064,
27840175-27840216,27840377-27840496,27840575-27840724,
27840830-27841534,27841609-27841954,27842978-27843080,
27844817-27844860,27845905-27846101,27846322-27846344,
27846802-27847122,27847406-27847579,27847843-27848047,
27848817-27848880,27850097-27850278,27850291-27850350,
27850688-27850748,27851249-27851313,27851491-27851569,
27851656-27852021,27852442-27852790,27852887-27852989,
27853103-27853373,27854296-27854405,27854515-27854652
Length = 3364
Score = 27.9 bits (59), Expect = 5.2
Identities = 17/40 (42%), Positives = 21/40 (52%)
Frame = -1
Query: 284 ATENIFFTDSEHP*FLRLKHRYQR*NSQEWVVSLLNHQIF 165
ATE IFF DS P FL + N+ +VSL N +F
Sbjct: 2687 ATE-IFFDDSNAPIFLNFSSQKDAKNAGSLLVSLRNEALF 2725
>04_03_0833 +
20147242-20147849,20147937-20148081,20148157-20148210,
20148297-20148388,20148957-20149093,20149210-20149464,
20149598-20149771,20149863-20149960
Length = 520
Score = 27.5 bits (58), Expect = 6.9
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3
Query: 258 IGKKNIFCGTSWTKRISHIGQERTSKQS 341
+G +NIFCG +W +S G +R S S
Sbjct: 274 VGGRNIFCGDTW---VSATGTDRASTYS 298
>12_02_0590 -
20853040-20853081,20853694-20853918,20854995-20855886,
20856120-20856122,20856284-20856513
Length = 463
Score = 27.1 bits (57), Expect = 9.1
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +1
Query: 340 VKRHQYDENSAENKIARLTAYIRCIQNIMEKNPRNSKMKRTVQEMID 480
V+R +D +A A+ +RC + EK PR K K +EM++
Sbjct: 28 VRRPSWDGGAAVGGRAKGFGVVRCC--VQEKKPRVRKTKEERREMVE 72
>12_02_0349 - 17820352-17821238,17822976-17823363
Length = 424
Score = 27.1 bits (57), Expect = 9.1
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +1
Query: 256 ESVKKIFSVAHLGQKEFHTLVKKELVNRVKRHQYDENSAENKIA 387
E+V+ + H + E H L ++ RVK H YD +A A
Sbjct: 258 EAVRLAMQLVHEAETEKHALQRQLDAFRVKAHLYDYEAAATAAA 301
>01_05_0743 +
24835349-24836009,24836925-24837068,24837154-24837306,
24837627-24837742,24837826-24837993,24838610-24838737,
24838827-24838926,24839119-24839205
Length = 518
Score = 27.1 bits (57), Expect = 9.1
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +2
Query: 68 RRFACSAIQSRGLKHQVNIKWVRPE 142
+RFAC +I +R L H+ +I+ VR E
Sbjct: 90 KRFACKSIATRKLAHRDDIEDVRRE 114
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,666,928
Number of Sequences: 37544
Number of extensions: 243586
Number of successful extensions: 609
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 609
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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