Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00073
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81098-5|CAB97235.1|  330|Caenorhabditis elegans Hypothetical pr...    56   1e-08
Z54306-3|CAE17716.1|  165|Caenorhabditis elegans Hypothetical pr...    30   1.2  
U40417-13|AAA81420.1| 1330|Caenorhabditis elegans Hypothetical p...    28   3.5  
AC006677-12|AAF39951.1|  182|Caenorhabditis elegans Hypothetical...    28   3.5  
AF067215-1|AAC17011.1|  495|Caenorhabditis elegans Hypothetical ...    28   4.7  
U53154-12|AAC25847.2|  380|Caenorhabditis elegans Serpentine rec...    27   8.1  
AC006712-6|AAO21405.1|  765|Caenorhabditis elegans Temporarily a...    27   8.1  
AC006712-5|AAK39326.2|  851|Caenorhabditis elegans Temporarily a...    27   8.1  

>Z81098-5|CAB97235.1|  330|Caenorhabditis elegans Hypothetical
           protein K07A12.7 protein.
          Length = 330

 Score = 56.4 bits (130), Expect = 1e-08
 Identities = 37/90 (41%), Positives = 51/90 (56%), Gaps = 5/90 (5%)
 Frame = +1

Query: 256 ESVKKIFSVAHLGQKEFHTLVKKELVNRVKRHQYDENSAENKIARLTAYIRCIQNIMEKN 435
           ESVKKIFSV    +KE     K+ L+  V++H  DENS E KIA LTA IR    ++   
Sbjct: 110 ESVKKIFSVEMATRKELSQEWKQSLIKSVRQHSLDENSLEMKIAWLTALIRHWSLLVNDI 169

Query: 436 PRNSKMKRT-----VQEMIDRRKKLLKYLR 510
            + +K K T     +  +I+ R+K L+ LR
Sbjct: 170 GQETKKKPTWLTHRIWLVINERRKALRILR 199


>Z54306-3|CAE17716.1|  165|Caenorhabditis elegans Hypothetical
           protein B0457.6 protein.
          Length = 165

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = +2

Query: 65  LRRFACSAIQ-SRGLKHQV-NIKWVRPEYVPAYKPEKSGDLEGLPPIPE 205
           LR+F  S  + SRG    V   K   P  +  + P+ S D  GLPPIPE
Sbjct: 94  LRQFFPSTPRLSRGFSDPVVRRKSSLPTILSCHSPDHSDDFLGLPPIPE 142


>U40417-13|AAA81420.1| 1330|Caenorhabditis elegans Hypothetical
           protein T08A9.1 protein.
          Length = 1330

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 17/56 (30%), Positives = 32/56 (57%)
 Frame = +1

Query: 349 HQYDENSAENKIARLTAYIRCIQNIMEKNPRNSKMKRTVQEMIDRRKKLLKYLRST 516
           +++ + SAE+ +  L+ +   +++ ++   R SKM+  V  M  R +KL KYL  T
Sbjct: 695 YEHIDYSAEDILLGLSDHTVQLEDAVK---RLSKMQNIVANMTPRNEKLFKYLHQT 747


>AC006677-12|AAF39951.1|  182|Caenorhabditis elegans Hypothetical
           protein R05D8.11 protein.
          Length = 182

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +1

Query: 223 LCFKRRNQGCSESVKKIFSVAHLGQKEFH-TLVKKE 327
           +CF  +N  CSE+++ ++    LG    H   VKK+
Sbjct: 55  VCFDTKNAECSETLESLYFGGDLGDDAIHYVFVKKD 90


>AF067215-1|AAC17011.1|  495|Caenorhabditis elegans Hypothetical
           protein ZK380.2 protein.
          Length = 495

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +2

Query: 119 NIKWVRPEYVPAYKPEKSGDLEGLPPIPENSIADIYALSEEI 244
           +IKW    YVP Y  E+S  LE +    + ++  +    EEI
Sbjct: 91  SIKWFMQTYVPNYSQEQSELLEQIIKNVDEAVKGLMKKDEEI 132


>U53154-12|AAC25847.2|  380|Caenorhabditis elegans Serpentine
           receptor, class w protein127 protein.
          Length = 380

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = -1

Query: 452 IFEFLGF-FSMMFCIQRMYAVNLAILFSAEFS 360
           IFE+LGF FSM F    M    + +L S++++
Sbjct: 309 IFEYLGFVFSMFFSANTMSHFIICLLISSQYN 340


>AC006712-6|AAO21405.1|  765|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 332, isoform b protein.
          Length = 765

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 15/58 (25%), Positives = 29/58 (50%)
 Frame = +1

Query: 319 KKELVNRVKRHQYDENSAENKIARLTAYIRCIQNIMEKNPRNSKMKRTVQEMIDRRKK 492
           KK    R+  +++D +  +NK+A      R + N++   P N     T+  +I RR++
Sbjct: 503 KKAASARLYGYEFDSDDEDNKMALTYEEKRNLSNLINNLPNN--QLNTIISIIQRRER 558


>AC006712-5|AAK39326.2|  851|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 332, isoform a protein.
          Length = 851

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 15/58 (25%), Positives = 29/58 (50%)
 Frame = +1

Query: 319 KKELVNRVKRHQYDENSAENKIARLTAYIRCIQNIMEKNPRNSKMKRTVQEMIDRRKK 492
           KK    R+  +++D +  +NK+A      R + N++   P N     T+  +I RR++
Sbjct: 503 KKAASARLYGYEFDSDDEDNKMALTYEEKRNLSNLINNLPNN--QLNTIISIIQRRER 558


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,772,361
Number of Sequences: 27780
Number of extensions: 244047
Number of successful extensions: 789
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 758
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 789
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)