Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00073
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g80620.1 68414.m09461 ribosomal protein S15 family protein si...    42   3e-04
At1g15810.1 68414.m01897 ribosomal protein S15 family protein co...    39   0.002
At5g66950.1 68418.m08440 expressed protein                             33   0.12 
At2g35510.1 68415.m04349 WWE domain-containing protein contains ...    29   2.5  
At1g68790.1 68414.m07863 expressed protein                             28   3.3  
At5g08150.1 68418.m00951 hypothetical protein hypothetical prote...    28   4.4  
At4g17920.1 68417.m02670 zinc finger (C3HC4-type RING finger) fa...    28   4.4  
At4g09150.1 68417.m01515 T-complex protein 11 contains Pfam PF05...    28   4.4  
At5g10420.1 68418.m01208 ripening-responsive protein, putative s...    27   5.8  
At3g14470.1 68416.m01833 disease resistance protein (NBS-LRR cla...    27   5.8  

>At1g80620.1 68414.m09461 ribosomal protein S15 family protein
           similar to ribosomal protein S15 GB:AAD36415 from
           [Thermotoga maritima]
          Length = 414

 Score = 41.5 bits (93), Expect = 3e-04
 Identities = 21/58 (36%), Positives = 37/58 (63%)
 Frame = +1

Query: 343 KRHQYDENSAENKIARLTAYIRCIQNIMEKNPRNSKMKRTVQEMIDRRKKLLKYLRST 516
           K  + D  SA  ++A+LT  I+ + +++ K  ++S+  + +  M+ RRKKLLKY+R T
Sbjct: 337 KMSESDCGSARVQVAQLTTKIKHLSSVLHKKDKHSR--KGLIAMVQRRKKLLKYMRRT 392


>At1g15810.1 68414.m01897 ribosomal protein S15 family protein
           contains similarity to ribosomal protein S15
          Length = 419

 Score = 39.1 bits (87), Expect = 0.002
 Identities = 21/58 (36%), Positives = 36/58 (62%)
 Frame = +1

Query: 343 KRHQYDENSAENKIARLTAYIRCIQNIMEKNPRNSKMKRTVQEMIDRRKKLLKYLRST 516
           K  + D  SA  ++A+LT  I+ + + + K  ++S+  + +  M+ +RKKLLKYLR T
Sbjct: 342 KMSESDCGSARVQVAQLTTKIKHLSSSLHKKDKHSR--KGLLGMVQKRKKLLKYLRRT 397


>At5g66950.1 68418.m08440 expressed protein
          Length = 870

 Score = 33.1 bits (72), Expect = 0.12
 Identities = 21/64 (32%), Positives = 30/64 (46%)
 Frame = +2

Query: 26  VVNADLLGIINTMLRRFACSAIQSRGLKHQVNIKWVRPEYVPAYKPEKSGDLEGLPPIPE 205
           V   D  G    ++++   S +QS+  K    I  + PEY P Y  +    LEGL  I +
Sbjct: 361 VFGYDPTGFGCLLIKKSVISCLQSQSGKTSSGIVKITPEY-PLYLSDSMDGLEGLTGIQD 419

Query: 206 NSIA 217
           N IA
Sbjct: 420 NGIA 423


>At2g35510.1 68415.m04349 WWE domain-containing protein contains
           Pfam domain, PF02825: WWE domain
          Length = 568

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 7/69 (10%)
 Frame = -3

Query: 192 GKPSKSPDFSGLYAGTYSGRTHLMLTWCFKPRL*IAEQAKRRNI-----VLIIPN--KSA 34
           GK  K P   G Y    SGR++  L W   P     +  KRRN+     V++  N  + +
Sbjct: 18  GKKRKHP---GNYTPYDSGRSYAKLQWVLSPNSSTQKLEKRRNLDGENKVIVSENHVEKS 74

Query: 33  LTTYSSYAK 7
           L  Y SY K
Sbjct: 75  LVRYFSYYK 83


>At1g68790.1 68414.m07863 expressed protein
          Length = 1085

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 18/93 (19%), Positives = 45/93 (48%), Gaps = 5/93 (5%)
 Frame = +1

Query: 256 ESVKKIFSVAHLGQKEFHTLVKKELVNRVKRHQYDENSAENKIARLTAYIRCIQNIMEKN 435
           ES+K   +   L +K+F  +  K  +   + H+++EN  E +   +   +   + +++  
Sbjct: 304 ESIKIKLNDISLKEKDFEAMKAKVDIKEKELHEFEENLIEREQMEIGKLLDDQKAVLDSR 363

Query: 436 PRN-----SKMKRTVQEMIDRRKKLLKYLRSTI 519
            R       +M+R++ E ++ +K  ++ L+  I
Sbjct: 364 RREFEMELEQMRRSLDEELEGKKAEIEQLQVEI 396


>At5g08150.1 68418.m00951 hypothetical protein hypothetical protein
           F14K14.2 - Arabidopsis thaliana, EMBL:AC011914
          Length = 144

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +1

Query: 361 ENSAENKIARLTAYIRCIQNIMEKNPRNSKMKRTVQEMI 477
           ++ A +     T+Y++  Q I E+N    K K+T +EM+
Sbjct: 54  DSDASSGPMEATSYLKLAQEIEEQNSIKKKKKKTNEEMV 92


>At4g17920.1 68417.m02670 zinc finger (C3HC4-type RING finger)
           family protein similar to RING-H2 zinc finger protein
           ATL6 [Arabidopsis thaliana] GI:4928403; contains Pfam
           profile PF00097: Zinc finger, C3HC4 type (RING finger)
          Length = 289

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -1

Query: 482 LSIISCTVRFIFEFLGFFSMMFC 414
           L++I   +  +F F+GFF++ FC
Sbjct: 23  LTVILTVILLVFFFIGFFTLYFC 45


>At4g09150.1 68417.m01515 T-complex protein 11 contains Pfam
           PF05794: T-complex protein 11
          Length = 1097

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 22/94 (23%), Positives = 36/94 (38%), Gaps = 2/94 (2%)
 Frame = +1

Query: 235 RRNQGCSESVKKIFSVAHLGQKEFHTLVKKELVNRVKRHQYDENSAENKIARLTAYIRCI 414
           +R +     +KK        +     + +K      KR    E       ARLT      
Sbjct: 167 KRQRAAQSLMKKAIQETRYKESVRAAIYQKRAAAESKRMGILEAERRRANARLTRVFGAA 226

Query: 415 QNIM-EKNPRNSKMKRTVQEMIDRRKKL-LKYLR 510
            ++  +K     KMK  ++E + R KKL  +Y+R
Sbjct: 227 SSVRSQKEAERRKMKDRLEERLQRAKKLKAQYMR 260


>At5g10420.1 68418.m01208 ripening-responsive protein, putative
           similar to ripening regulated protein DDTFR18
           [Lycopersicon esculentum] GI:12231296; contains Pfam
           profile PF01554: Uncharacterized membrane protein family
          Length = 456

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 12/21 (57%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
 Frame = +3

Query: 33  MQIYWELLILCCD-VLPVLLF 92
           MQ YW +L LCC  +LP+ LF
Sbjct: 120 MQRYWIILFLCCILLLPMYLF 140


>At3g14470.1 68416.m01833 disease resistance protein (NBS-LRR
           class), putative domain signature NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1054

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 20/73 (27%), Positives = 33/73 (45%)
 Frame = +1

Query: 262 VKKIFSVAHLGQKEFHTLVKKELVNRVKRHQYDENSAENKIARLTAYIRCIQNIMEKNPR 441
           + ++F  A L Q  F TLV +   +  KR + +EN  E     L      + +  EK   
Sbjct: 4   IGEMFLAAFL-QALFQTLVSEPFRSFFKRRELNENLLERLSTALLTITAVLIDAEEKQIT 62

Query: 442 NSKMKRTVQEMID 480
           N  +++ V E+ D
Sbjct: 63  NPVVEKWVNELRD 75


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,846,158
Number of Sequences: 28952
Number of extensions: 217263
Number of successful extensions: 588
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 588
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)