Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00071
         (690 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g02065.2 68414.m00127 squamosa promoter-binding protein-like ...    30   1.3  
At1g02065.1 68414.m00128 squamosa promoter-binding protein-like ...    30   1.3  

>At1g02065.2 68414.m00127 squamosa promoter-binding protein-like 8
           (SPL8) identical to squamosa promoter binding
           protein-like 8 [Arabidopsis thaliana] GI:5931679;
           contains Pfam profile PF03110: SBP domain
          Length = 246

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 15/40 (37%), Positives = 18/40 (45%)
 Frame = -1

Query: 363 LWGQRRIRSQNLESHEHEGAQQGSAVGTTLQNADDAILQP 244
           L+GQ    +Q L  H H  +  GS   TT   A D I  P
Sbjct: 67  LYGQTNSNNQFLHHHHHHHSLYGSTTTTTPYGASDPIYHP 106


>At1g02065.1 68414.m00128 squamosa promoter-binding protein-like 8
           (SPL8) identical to squamosa promoter binding
           protein-like 8 [Arabidopsis thaliana] GI:5931679;
           contains Pfam profile PF03110: SBP domain
          Length = 333

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 15/40 (37%), Positives = 18/40 (45%)
 Frame = -1

Query: 363 LWGQRRIRSQNLESHEHEGAQQGSAVGTTLQNADDAILQP 244
           L+GQ    +Q L  H H  +  GS   TT   A D I  P
Sbjct: 67  LYGQTNSNNQFLHHHHHHHSLYGSTTTTTPYGASDPIYHP 106


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,571,429
Number of Sequences: 28952
Number of extensions: 263129
Number of successful extensions: 622
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 622
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1467502800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)