Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00070
         (713 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC342.03 |||1,3-beta-glucanosyltransferase |Schizosaccharomyce...    27   2.0  
SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces pombe...    27   2.7  
SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces pombe...    27   3.5  
SPCC622.05 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         27   3.5  
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom...    26   4.7  
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    26   6.1  

>SPBC342.03 |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 456

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 16/46 (34%), Positives = 21/46 (45%)
 Frame = -1

Query: 485 PTNMWSNIKEGNKRISDILHTKPAMNNVDKNILPTSKPFKGLYSVS 348
           PTNMWS   +G+   S     KP   N   N+  T+    G+ S S
Sbjct: 387 PTNMWSPFHDGDDDESTSRRPKP--KNKPSNVTSTTSYTSGMTSSS 430


>SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 659

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 17/52 (32%), Positives = 24/52 (46%)
 Frame = -1

Query: 542 NQFSVFIAPSYHTHSSIIPPTNMWSNIKEGNKRISDILHTKPAMNNVDKNIL 387
           N  S   + SY T      P+N  S  K  NKR+S +   K A + + + IL
Sbjct: 432 NDISPSSSSSYSTAQISTFPSNQESIYKNINKRLSTLEERKKAFDEIVEKIL 483


>SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 527

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = +2

Query: 41  LLLLYGGEAFVAGGLPVQLLRSHCLAIVLLAINGVTECYSFATMTSSQL 187
           ++LL+G  +  A      +L  + + I  +A NGV E +  +   SSQL
Sbjct: 346 IVLLFGAGSKWASPDSSSILSWYAMYIPFMAANGVLEAFYVSAANSSQL 394


>SPCC622.05 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 115

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 16/60 (26%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
 Frame = +2

Query: 101 RSHCLAIVL----LAINGVTECYSFATMTSSQLNSYNYLMVIFSVSFLVLSYCLTLFLVL 268
           + HC  +V+    L+I+   EC+ +  +  SQ +   +L  +FSV  +++S  + +F +L
Sbjct: 15  KEHCYTMVISFAVLSIHYACECFLYPKLFDSQRSPSPFLRWLFSVLGVLMS--MDVFCIL 72


>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1375

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = -1

Query: 506 THSSIIPPTNMWSNIKEGNKRISDIL 429
           T+S++  P  +WS + E N+R+  I+
Sbjct: 100 TYSALKAPLKIWSKLWEDNRRLKKII 125


>SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1588

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = +3

Query: 39   HYCFCMEERRSLQVDC 86
            HYCFC +    + ++C
Sbjct: 1172 HYCFCRQPEAGMMIEC 1187


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,878,811
Number of Sequences: 5004
Number of extensions: 59058
Number of successful extensions: 140
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)