Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00070
         (713 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57854| Best HMM Match : No HMM Matches (HMM E-Value=.)              67   1e-11
SB_7052| Best HMM Match : LRR_1 (HMM E-Value=2e-12)                    31   0.70 
SB_6751| Best HMM Match : Neur_chan_memb (HMM E-Value=1.7e-07)         30   1.6  
SB_4545| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.7  

>SB_57854| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 562

 Score = 67.3 bits (157), Expect = 1e-11
 Identities = 32/75 (42%), Positives = 50/75 (66%), Gaps = 4/75 (5%)
 Frame = +2

Query: 47  LLYGGEAFVAGGLPV----QLLRSHCLAIVLLAINGVTECYSFATMTSSQLNSYNYLMVI 214
           +L GGE   A  L +     LLR +C+ ++++A+NG+TEC+ FA M+   ++ YNY M++
Sbjct: 371 MLSGGEVDPADMLTMFAGSSLLRWYCVYVLIIAVNGITECFMFAAMSKQDVDLYNYKMML 430

Query: 215 FSVSFLVLSYCLTLF 259
           FSV FL  S+ LT+F
Sbjct: 431 FSVIFLFASWYLTIF 445


>SB_7052| Best HMM Match : LRR_1 (HMM E-Value=2e-12)
          Length = 1328

 Score = 31.5 bits (68), Expect = 0.70
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +3

Query: 462 YITPHISGRNYAAMCMIAWGYENRELVVKMHRKI 563
           +++P +SGRNY+     AWG   RE   + HR++
Sbjct: 696 WLSPALSGRNYSVPLESAWGDYLREAENEWHRRL 729


>SB_6751| Best HMM Match : Neur_chan_memb (HMM E-Value=1.7e-07)
          Length = 213

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 12/22 (54%), Positives = 18/22 (81%)
 Frame = +2

Query: 200 YLMVIFSVSFLVLSYCLTLFLV 265
           YLMV F++ FLVL  C+T+F++
Sbjct: 128 YLMVSFTLVFLVLIECMTVFVI 149


>SB_4545| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 364

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 12/22 (54%), Positives = 17/22 (77%)
 Frame = +2

Query: 200 YLMVIFSVSFLVLSYCLTLFLV 265
           YLMV FS+ FLVL  C+ +F++
Sbjct: 228 YLMVSFSLVFLVLIECMIVFVI 249


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,069,214
Number of Sequences: 59808
Number of extensions: 396760
Number of successful extensions: 714
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 713
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1889780269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)