Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00070
         (713 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58748-5|AAP31419.1|  285|Caenorhabditis elegans Hypothetical pr...    43   3e-04
U58748-4|AAB52967.1|  522|Caenorhabditis elegans Hypothetical pr...    43   3e-04
Z81557-2|CAB04536.1|  354|Caenorhabditis elegans Hypothetical pr...    30   1.4  
U21319-1|AAC46673.2|  258|Caenorhabditis elegans Hypothetical pr...    30   1.9  
Z73969-8|CAA98239.1|  351|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z70780-1|CAA94819.1|  336|Caenorhabditis elegans Hypothetical pr...    29   4.4  
U80447-8|AAB37812.3|  900|Caenorhabditis elegans Patched related...    29   4.4  

>U58748-5|AAP31419.1|  285|Caenorhabditis elegans Hypothetical
           protein ZK180.3b protein.
          Length = 285

 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 21/74 (28%), Positives = 45/74 (60%)
 Frame = +2

Query: 41  LLLLYGGEAFVAGGLPVQLLRSHCLAIVLLAINGVTECYSFATMTSSQLNSYNYLMVIFS 220
           ++ LYGG+     G  + LL  +   I++ AING+TE ++ A+M + Q+ ++   + + S
Sbjct: 193 VISLYGGKLLSENGGAL-LLSLYSGYILVTAINGITEGFAMASMDNRQIFTHGKFLFVTS 251

Query: 221 VSFLVLSYCLTLFL 262
           +  L+++Y L +++
Sbjct: 252 IIHLIINYVLCVYM 265


>U58748-4|AAB52967.1|  522|Caenorhabditis elegans Hypothetical
           protein ZK180.3a protein.
          Length = 522

 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 21/74 (28%), Positives = 45/74 (60%)
 Frame = +2

Query: 41  LLLLYGGEAFVAGGLPVQLLRSHCLAIVLLAINGVTECYSFATMTSSQLNSYNYLMVIFS 220
           ++ LYGG+     G  + LL  +   I++ AING+TE ++ A+M + Q+ ++   + + S
Sbjct: 341 VISLYGGKLLSENGGAL-LLSLYSGYILVTAINGITEGFAMASMDNRQIFTHGKFLFVTS 399

Query: 221 VSFLVLSYCLTLFL 262
           +  L+++Y L +++
Sbjct: 400 IIHLIINYVLCVYM 413


>Z81557-2|CAB04536.1|  354|Caenorhabditis elegans Hypothetical
           protein F59A1.4 protein.
          Length = 354

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 19/44 (43%), Positives = 25/44 (56%)
 Frame = +2

Query: 110 CLAIVLLAINGVTECYSFATMTSSQLNSYNYLMVIFSVSFLVLS 241
           CL+I+   IN +   Y     T+ QL SY YLM+ FS+  LV S
Sbjct: 15  CLSIL---INSIL-MYMIRKKTTKQLGSYVYLMLSFSIFELVFS 54


>U21319-1|AAC46673.2|  258|Caenorhabditis elegans Hypothetical
           protein C30G12.4 protein.
          Length = 258

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +2

Query: 383 LAKYFYQHCSLLVLYVKYLKFACSLLLYYSTY 478
           L  + ++ CSL   Y  Y+  +C LLLYY T+
Sbjct: 93  LNSHSFECCSLTFSY-SYMMVSCKLLLYYGTF 123


>Z73969-8|CAA98239.1|  351|Caenorhabditis elegans Hypothetical
           protein C12D8.12 protein.
          Length = 351

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +2

Query: 110 CLAIVLLAINGVTECYSFATMTSSQLNSYNYLMVIFSVSFLVLS 241
           C A+++         Y   T ++S++ SY Y+M+  S+S L  S
Sbjct: 11  CFALLISIFLNTILTYLILTKSNSKMGSYKYIMMYLSLSALCYS 54


>Z70780-1|CAA94819.1|  336|Caenorhabditis elegans Hypothetical
           protein F46B6.2 protein.
          Length = 336

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 4/38 (10%)
 Frame = +2

Query: 164 ATMTSSQLNSYNYLMVI----FSVSFLVLSYCLTLFLV 265
           AT T  +L SY+Y +VI      VSF  L YC T F +
Sbjct: 171 ATETKIRLYSYHYQVVISIFIIIVSFFHLRYCCTFFFL 208


>U80447-8|AAB37812.3|  900|Caenorhabditis elegans Patched related
           family protein 10 protein.
          Length = 900

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +2

Query: 398 YQHCSLLVLYVKYLKFACSLLLYYS 472
           Y  C+LL+ +   L F C++L+YY+
Sbjct: 409 YTMCALLLTFAYQLTFFCAILVYYT 433


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,571,007
Number of Sequences: 27780
Number of extensions: 321002
Number of successful extensions: 847
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 784
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 847
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)