Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00070
         (713 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   2.2  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   2.2  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   2.2  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    22   5.0  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   8.8  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   8.8  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       21   8.8  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +3

Query: 375 LACWQNIFINIVHCW 419
           L+CW NI+  I+  W
Sbjct: 107 LSCWTNIYYIIILAW 121


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +3

Query: 375 LACWQNIFINIVHCW 419
           L+CW NI+  I+  W
Sbjct: 160 LSCWTNIYYIIILAW 174


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +3

Query: 519 GYENRELVVKMHRKIMN 569
           G  N ELV +MH K+ N
Sbjct: 352 GLRNTELVERMHNKLRN 368


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 4/15 (26%), Positives = 10/15 (66%)
 Frame = +3

Query: 375 LACWQNIFINIVHCW 419
           ++CW N++  ++  W
Sbjct: 69  MSCWMNVYYIVILAW 83


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 200 YLMVIFSVSFLVLSYCLTLFLVL 268
           Y  +IF VSF++ +    +F VL
Sbjct: 467 YSRIIFPVSFMLFNAIYWIFYVL 489


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -3

Query: 105 LLSNCTGNPPATNASPPYKSN 43
           L+S C+GNP A        SN
Sbjct: 15  LISGCSGNPDAKRLYDDLLSN 35


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +1

Query: 385 GKIFLSTLFIAGFVCKISEIRLF 453
           GKI LS  +I   VC + +  +F
Sbjct: 153 GKIMLSFAWIGSVVCSLPQTIVF 175


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,325
Number of Sequences: 438
Number of extensions: 4426
Number of successful extensions: 22
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22048515
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)