Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00069
(738 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1105.09 |ubc15||ubiquitin conjugating enzyme Ubc15|Schizosac... 64 2e-11
SPBP16F5.04 |ubc3|ubcp3|ubiquitin conjugating enzyme Ubc3|Schizo... 51 2e-07
SPAC18B11.07c |rhp6|ubc2|Rad6 homolog, ubiquitin conjugating enz... 39 9e-04
SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog, Rhp... 32 0.074
SPCC1259.15c |ubc11|ubcdp, ubcp4|ubiquitin conjugating enzyme E2... 31 0.17
SPBC4F6.11c |||asparagine synthase |Schizosaccharomyces pombe|ch... 29 0.91
SPBC1198.09 |ubc16||ubiquitin conjugating enzyme Ubc16|Schizosac... 27 2.1
SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase Ran1|Schi... 27 2.8
SPAC1296.01c ||SPAC22F3.01|phosphoacetylglucosamine mutase |Schi... 27 3.7
SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme Hus5|Schizosacch... 26 4.9
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c... 26 4.9
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch... 26 4.9
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr... 26 6.4
SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces pombe... 26 6.4
>SPBC1105.09 |ubc15||ubiquitin conjugating enzyme
Ubc15|Schizosaccharomyces pombe|chr 2|||Manual
Length = 167
Score = 64.1 bits (149), Expect = 2e-11
Identities = 30/42 (71%), Positives = 35/42 (83%)
Frame = +1
Query: 1 VISMLADPNDESPANVDAAKEWRERYSEFKKKVARCVRKSQE 126
VISML+ PNDESPAN+DAAKE+RE EFKK+V R VR+S E
Sbjct: 124 VISMLSSPNDESPANIDAAKEFRENPQEFKKRVRRLVRRSIE 165
>SPBP16F5.04 |ubc3|ubcp3|ubiquitin conjugating enzyme
Ubc3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 50.8 bits (116), Expect = 2e-07
Identities = 23/40 (57%), Positives = 29/40 (72%)
Frame = +1
Query: 1 VISMLADPNDESPANVDAAKEWRERYSEFKKKVARCVRKS 120
V+SMLA+PNDES AN+DA K WRE E+ + V R RK+
Sbjct: 124 VMSMLAEPNDESGANIDACKMWREDREEYCRVVRRLARKT 163
>SPAC18B11.07c |rhp6|ubc2|Rad6 homolog, ubiquitin conjugating enzyme
E2 Rhp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 151
Score = 38.7 bits (86), Expect = 9e-04
Identities = 18/40 (45%), Positives = 26/40 (65%)
Frame = +1
Query: 7 SMLADPNDESPANVDAAKEWRERYSEFKKKVARCVRKSQE 126
S+L DPN+ SPAN +AA+ RE E+ ++V + V S E
Sbjct: 111 SLLNDPNNASPANAEAAQLHRENKKEYVRRVRKTVEDSWE 150
>SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog,
Rhp9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 778
Score = 32.3 bits (70), Expect = 0.074
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = -2
Query: 461 TTSHQSLSQSKQI-MKKGTVIRNNPLGSFSHTVLLSF*TPNRILSTLSAKMKQN 303
T S + +Q K+ +KKG V+++ LG HTV+ +F + N LS ++ N
Sbjct: 404 TMSTVNSNQIKRFFLKKGDVVQSTRLGKIKHTVVKTFRSTNEQLSLIAVDALNN 457
>SPCC1259.15c |ubc11|ubcdp, ubcp4|ubiquitin conjugating enzyme E2-C
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 176
Score = 31.1 bits (67), Expect = 0.17
Identities = 13/40 (32%), Positives = 24/40 (60%)
Frame = +1
Query: 7 SMLADPNDESPANVDAAKEWRERYSEFKKKVARCVRKSQE 126
S+L +PN+ SP N AA+ W + E+K+ + + ++ E
Sbjct: 136 SLLGEPNNASPLNAQAAELWSKDPIEYKRLLMQRYKEIDE 175
>SPBC4F6.11c |||asparagine synthase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 548
Score = 28.7 bits (61), Expect = 0.91
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +2
Query: 227 NVIHLASPYDPLTPNPHTSTADVFAYSVSFLQKEWRESYSE 349
+V+HL P D LTP PH D F + + + W+ ++S+
Sbjct: 53 SVLHLRGPSDHLTPQPH---VDSFGNVLCWNGEIWQINHSD 90
>SPBC1198.09 |ubc16||ubiquitin conjugating enzyme
Ubc16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 160
Score = 27.5 bits (58), Expect = 2.1
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +1
Query: 1 VISMLADPNDESPANVDAAKEWRERYSEFKKKVARC 108
+IS+L++ + SP NVDAAK R + RC
Sbjct: 111 IISLLSNYDASSPLNVDAAKLLRTGDKTAYNSLVRC 146
>SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase
Ran1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 470
Score = 27.1 bits (57), Expect = 2.8
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +2
Query: 242 ASPYDPLTPNPHTSTADVFAY 304
A+ Y P+TP P+ + A +F Y
Sbjct: 415 ANSYMPITPTPYPNNAKIFGY 435
>SPAC1296.01c ||SPAC22F3.01|phosphoacetylglucosamine mutase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 542
Score = 26.6 bits (56), Expect = 3.7
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = +2
Query: 188 IVTPANI-LLQTLKNVIHLASPYDPLTPNPHTSTADVFAYSVSFLQKEWRESYSEFKRKV 364
+++PA L+TLK V L + D + A+ L KEW + YSE ++
Sbjct: 407 VLSPAQFNALKTLKTVFELINQTDGDAITNLLLVEVILAHKNCTL-KEWNQLYSEIPSRL 465
Query: 365 AQC 373
+C
Sbjct: 466 IRC 468
>SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme
Hus5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 157
Score = 26.2 bits (55), Expect = 4.9
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +1
Query: 10 MLADPNDESPANVDAAKEWRERYSEFKKKVARCVRKS 120
+L DPN SPA +A +++ E++K+V R++
Sbjct: 119 LLDDPNIASPAQTEAYTMFKKDKVEYEKRVRAQAREN 155
>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1717
Score = 26.2 bits (55), Expect = 4.9
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = -2
Query: 470 SVLTTSHQSLSQSKQIMKKGTVIRNNPLG 384
++ T S +SKQ +K+ T ++N+P G
Sbjct: 497 TIFTQGPNSTKESKQAVKEETSVKNSPKG 525
>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
Eme1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 26.2 bits (55), Expect = 4.9
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = +2
Query: 2 SFQCSLIQMMRVPLMLMLQKNGENDIRNSKRKLPDVLGKVKKIASRS 142
S Q + MR+P + NS +K D L K++K+ SRS
Sbjct: 331 SIQSRAFKKMRLPKISRTTDTPPASTSNSNKKNLDKLKKMRKLCSRS 377
>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1471
Score = 25.8 bits (54), Expect = 6.4
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +2
Query: 14 SLIQMMRVPLMLMLQKNGENDI 79
SL+ +M+ PL+ L+KN ND+
Sbjct: 1351 SLLPLMQSPLVFCLRKNDANDL 1372
>SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 527
Score = 25.8 bits (54), Expect = 6.4
Identities = 18/46 (39%), Positives = 24/46 (52%)
Frame = -3
Query: 601 KKDEKKTFNSILFIKYGSDTISLL*VFILNQLNIVSGPGGGVRSAS 464
KKDEKK N + +I +SL +F N +IV G G + AS
Sbjct: 313 KKDEKKALNLLAWILKLYSYMSLFILFGSNYSDIVLLFGAGSKWAS 358
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,183,627
Number of Sequences: 5004
Number of extensions: 68576
Number of successful extensions: 216
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -