Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00069
(738 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1289 - 36010924-36011001,36011441-36011518,36012321-360124... 71 7e-13
05_05_0110 + 22470869-22470920,22471044-22471146,22473261-224733... 71 1e-12
07_01_0481 - 3621798-3621926,3622572-3622660,3622780-3622933,362... 38 0.008
05_01_0561 + 4905107-4905272,4905945-4906033,4906832-4906960 38 0.008
03_06_0260 - 32717142-32717270,32717743-32717831,32717950-327180... 38 0.008
01_01_1187 + 9444742-9445317 32 0.55
02_01_0262 - 1734447-1735090,1735219-1735367,1735458-1735633,173... 31 1.3
01_03_0184 + 13560830-13562981,13563604-13564088 30 1.7
08_02_0468 - 17505905-17506002,17506295-17506424,17506662-175067... 30 2.2
09_02_0429 + 9306862-9306970,9307834-9307942,9308538-9308616,930... 28 6.7
>01_06_1289 -
36010924-36011001,36011441-36011518,36012321-36012421,
36012506-36012603,36016213-36016315,36016435-36016486
Length = 169
Score = 71.3 bits (167), Expect = 7e-13
Identities = 31/42 (73%), Positives = 37/42 (88%)
Frame = +1
Query: 1 VISMLADPNDESPANVDAAKEWRERYSEFKKKVARCVRKSQE 126
+ISML+ PNDESPAN++AAKEWRE+ +FKKKV R VRKSQE
Sbjct: 126 IISMLSGPNDESPANIEAAKEWREKRDDFKKKVRRLVRKSQE 167
Score = 36.3 bits (80), Expect = 0.025
Identities = 15/23 (65%), Positives = 18/23 (78%)
Frame = +2
Query: 323 KEWRESYSEFKRKVAQCVRKSQE 391
KEWRE +FK+KV + VRKSQE
Sbjct: 145 KEWREKRDDFKKKVRRLVRKSQE 167
>05_05_0110 +
22470869-22470920,22471044-22471146,22473261-22473358,
22473430-22473530,22474052-22474129,22474578-22474655
Length = 169
Score = 70.5 bits (165), Expect = 1e-12
Identities = 30/42 (71%), Positives = 37/42 (88%)
Frame = +1
Query: 1 VISMLADPNDESPANVDAAKEWRERYSEFKKKVARCVRKSQE 126
+ISML+ PNDESPAN++AAK+WRE+ +FKKKV R VRKSQE
Sbjct: 126 IISMLSSPNDESPANIEAAKDWREKRDDFKKKVRRIVRKSQE 167
Score = 35.1 bits (77), Expect = 0.059
Identities = 14/23 (60%), Positives = 18/23 (78%)
Frame = +2
Query: 323 KEWRESYSEFKRKVAQCVRKSQE 391
K+WRE +FK+KV + VRKSQE
Sbjct: 145 KDWREKRDDFKKKVRRIVRKSQE 167
>07_01_0481 -
3621798-3621926,3622572-3622660,3622780-3622933,
3624104-3624111,3625522-3625547,3625757-3625881
Length = 176
Score = 37.9 bits (84), Expect = 0.008
Identities = 17/38 (44%), Positives = 24/38 (63%)
Frame = +1
Query: 7 SMLADPNDESPANVDAAKEWRERYSEFKKKVARCVRKS 120
S+L DPN SPAN +AA+ + E E+ +KV V +S
Sbjct: 135 SLLCDPNPNSPANSEAARLFSENKREYNRKVREIVEQS 172
>05_01_0561 + 4905107-4905272,4905945-4906033,4906832-4906960
Length = 127
Score = 37.9 bits (84), Expect = 0.008
Identities = 17/38 (44%), Positives = 24/38 (63%)
Frame = +1
Query: 7 SMLADPNDESPANVDAAKEWRERYSEFKKKVARCVRKS 120
S+L DPN SPAN +AA+ + E E+ +KV V +S
Sbjct: 86 SLLCDPNPNSPANSEAARLFSENKREYNRKVREIVEQS 123
>03_06_0260 -
32717142-32717270,32717743-32717831,32717950-32718039,
32721571-32721596,32721772-32721896
Length = 152
Score = 37.9 bits (84), Expect = 0.008
Identities = 17/38 (44%), Positives = 24/38 (63%)
Frame = +1
Query: 7 SMLADPNDESPANVDAAKEWRERYSEFKKKVARCVRKS 120
S+L DPN SPAN +AA+ + E E+ +KV V +S
Sbjct: 111 SLLCDPNPNSPANSEAARLFSENKREYNRKVREIVEQS 148
>01_01_1187 + 9444742-9445317
Length = 191
Score = 31.9 bits (69), Expect = 0.55
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +1
Query: 7 SMLADPNDESPANVDAAKEWRERYSEFKKKVAR 105
S+L +PN++SP N AA W + EF+K V +
Sbjct: 154 SLLGEPNNDSPLNTQAAALWPNQ-DEFRKMVEK 185
>02_01_0262 -
1734447-1735090,1735219-1735367,1735458-1735633,
1735719-1735853,1737039-1737120,1737307-1737461
Length = 446
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/47 (29%), Positives = 27/47 (57%)
Frame = +2
Query: 122 KKIASRSKRIFRKEYIYC*KRAIVTPANILLQTLKNVIHLASPYDPL 262
+K + + RI++KE + K I+ +LL T++ ++ PY+PL
Sbjct: 112 RKDCNAAHRIYQKEVLEKQKELILVGETLLLSTIRFDFNIQHPYEPL 158
>01_03_0184 + 13560830-13562981,13563604-13564088
Length = 878
Score = 30.3 bits (65), Expect = 1.7
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = -3
Query: 637 FHHYNNC*LTCLKKDEKKTFNSILF 563
F+H C L C K D+ K F SILF
Sbjct: 393 FYHQITCVLICGKNDQAKQFGSILF 417
>08_02_0468 -
17505905-17506002,17506295-17506424,17506662-17506778,
17506881-17506959,17507546-17507654,17507857-17507969,
17510510-17510570,17511562-17511742,17512903-17512960,
17514292-17514497,17514582-17514671,17514752-17514813,
17514911-17514979,17515330-17515334,17516282-17516454
Length = 516
Score = 29.9 bits (64), Expect = 2.2
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +1
Query: 10 MLADPNDESPANVDAAKEWRERYSEFKKKVARCV 111
+ + PNDE P N +AA R+ +F++ V R +
Sbjct: 439 LFSQPNDEDPLNHEAAAVLRDNPEKFERNVQRAM 472
>09_02_0429 +
9306862-9306970,9307834-9307942,9308538-9308616,
9308806-9308922,9309185-9309314,9311071-9311111
Length = 194
Score = 28.3 bits (60), Expect = 6.7
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 10 MLADPNDESPANVDAAKEWRERYSEFKKKV 99
+ PNDE P N DAA R+ +F++ V
Sbjct: 136 LFIQPNDEDPLNHDAAAVLRDDPQKFRRNV 165
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,205,313
Number of Sequences: 37544
Number of extensions: 392162
Number of successful extensions: 908
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 871
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 908
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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