Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00069
         (738 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41378| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   0.002
SB_26407| Best HMM Match : UQ_con (HMM E-Value=0)                      34   0.14 
SB_23713| Best HMM Match : Disintegrin (HMM E-Value=6.6e-05)           32   0.56 
SB_1677| Best HMM Match : WD40 (HMM E-Value=0.00074)                   31   0.97 
SB_48913| Best HMM Match : TSP_1 (HMM E-Value=1.8e-11)                 31   1.3  
SB_43222| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_33602| Best HMM Match : Amelogenin (HMM E-Value=0.83)               29   3.0  
SB_43077| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.2  
SB_45038| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  
SB_21169| Best HMM Match : zf-CHY (HMM E-Value=2.1e-09)                28   9.1  

>SB_41378| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 473

 Score = 40.3 bits (90), Expect = 0.002
 Identities = 18/19 (94%), Positives = 19/19 (100%)
 Frame = +1

Query: 1   VISMLADPNDESPANVDAA 57
           VISMLA+PNDESPANVDAA
Sbjct: 451 VISMLAEPNDESPANVDAA 469


>SB_26407| Best HMM Match : UQ_con (HMM E-Value=0)
          Length = 1282

 Score = 33.9 bits (74), Expect = 0.14
 Identities = 19/37 (51%), Positives = 27/37 (72%), Gaps = 6/37 (16%)
 Frame = +1

Query: 1    VISMLADPNDESPANVDAA---KEWRE---RYSEFKK 93
            VIS+L +PN  SPANVDA+   ++WRE   + SE++K
Sbjct: 1243 VISLLNEPNTFSPANVDASVMFRKWRETKGKDSEYEK 1279


>SB_23713| Best HMM Match : Disintegrin (HMM E-Value=6.6e-05)
          Length = 1154

 Score = 31.9 bits (69), Expect = 0.56
 Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
 Frame = +1

Query: 37  PANVDAAKEWRERYSEFKKKVARCVRKSQED-CF*EQKDI*KRIYILLKKGHCDTGKHFT 213
           PA+V   ++  +++S   K+    V KS+ + CF E +DI    Y L +   CD G    
Sbjct: 347 PASVSGQRDNNKKFSPCSKRQVSYVLKSKSELCFKEPRDIICGNYKLEEGEECDPGNLGV 406

Query: 214 TNTE 225
           T T+
Sbjct: 407 TGTK 410


>SB_1677| Best HMM Match : WD40 (HMM E-Value=0.00074)
          Length = 1087

 Score = 31.1 bits (67), Expect = 0.97
 Identities = 15/28 (53%), Positives = 20/28 (71%), Gaps = 2/28 (7%)
 Frame = +1

Query: 22  PNDESPANV--DAAKEWRERYSEFKKKV 99
           PN+E+ ANV  D AK W E+ +E +KKV
Sbjct: 127 PNEEAHANVIVDPAKSWDEQNNEVQKKV 154


>SB_48913| Best HMM Match : TSP_1 (HMM E-Value=1.8e-11)
          Length = 1068

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 17/41 (41%), Positives = 22/41 (53%)
 Frame = -3

Query: 703 DNIGGITKKKMQIYFSIKLPYTFHHYNNC*LTCLKKDEKKT 581
           +N G I KKK Q YF IK+   F   N+C  TC    + +T
Sbjct: 866 ENNGDILKKKPQTYFVIKI-LEFLPKNSCTTTCAGGQQTRT 905


>SB_43222| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 207

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 14/46 (30%), Positives = 26/46 (56%)
 Frame = +2

Query: 251 YDPLTPNPHTSTADVFAYSVSFLQKEWRESYSEFKRKVAQCVRKSQ 388
           Y+  TP+    TAD+FA  ++ +Q E  +  ++  R +  C+R S+
Sbjct: 51  YEKYTPDMSEDTADLFALCLAEMQPEDVDKLTQVARAMPTCLRCSR 96


>SB_33602| Best HMM Match : Amelogenin (HMM E-Value=0.83)
          Length = 242

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +2

Query: 239 LASPYDPLTPNPHTSTA 289
           + SP+DP+TP PH  TA
Sbjct: 54  IPSPHDPITPRPHRPTA 70


>SB_43077| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1149

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
 Frame = -1

Query: 291 SAVDVCGFGVRGSYGDAKCI----TFFSVCSKMFAG 196
           S +D CG G  G + DA CI    +F   C + F G
Sbjct: 865 SDIDECGIGSHGCHSDAICINTPGSFICRCKRGFGG 900


>SB_45038| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 561

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 18/48 (37%), Positives = 22/48 (45%)
 Frame = +2

Query: 245 SPYDPLTPNPHTSTADVFAYSVSFLQKEWRESYSEFKRKVAQCVRKSQ 388
           SP  PL      STA      V  L+KE RE  +E   +V   + KSQ
Sbjct: 132 SPQKPLRSLDSVSTASSETSLVDALEKELREQEAEEPDEVRSIITKSQ 179


>SB_21169| Best HMM Match : zf-CHY (HMM E-Value=2.1e-09)
          Length = 2059

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = +1

Query: 55   AKEWRERYSEFKKKVA-RCVRKSQEDCF*EQKDI*KRIYILLKKGHCDTGKHFTTNTEKR 231
            +KE RE   + K  +  RC+   +E    E+ D  +     L +  C   KHFT N +K 
Sbjct: 1881 SKECRESLRKAKDAIRLRCLTCLREQDITEESDSCQSCKAPLAEFFCGICKHFTGNEKKP 1940

Query: 232  Y 234
            Y
Sbjct: 1941 Y 1941


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,993,487
Number of Sequences: 59808
Number of extensions: 489161
Number of successful extensions: 1354
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1269
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1352
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1986074805
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)