Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00069
         (738 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z22179-13|CAA80166.1|  164|Caenorhabditis elegans Hypothetical p...    73   2e-13
AL110500-10|CAB60431.1|  170|Caenorhabditis elegans Hypothetical...    55   6e-08
AC025726-12|AAK73914.3|  243|Caenorhabditis elegans Ubiquitin co...    37   0.017
U08139-1|AAA83388.1|  192|Caenorhabditis elegans ubc-1 protein.        35   0.069
AF045638-8|AAC02561.2|  192|Caenorhabditis elegans Ubiquitin con...    35   0.069
Z92784-2|CAB07193.3| 2029|Caenorhabditis elegans Hypothetical pr...    34   0.091
Z66520-3|CAA91389.2|  160|Caenorhabditis elegans Hypothetical pr...    29   4.5  
U56961-6|AAK39299.1|  497|Caenorhabditis elegans Hypothetical pr...    29   4.5  
AC006693-3|AAF60377.1|  455|Caenorhabditis elegans Skn related p...    28   7.9  

>Z22179-13|CAA80166.1|  164|Caenorhabditis elegans Hypothetical
           protein F58A4.10 protein.
          Length = 164

 Score = 72.9 bits (171), Expect = 2e-13
 Identities = 34/43 (79%), Positives = 38/43 (88%)
 Frame = +1

Query: 1   VISMLADPNDESPANVDAAKEWRERYSEFKKKVARCVRKSQED 129
           VISML DPN ESPANVDAAK  RE Y+EFKKKVA+CVR+SQE+
Sbjct: 122 VISMLTDPNFESPANVDAAKMQRENYAEFKKKVAQCVRRSQEE 164



 Score = 41.1 bits (92), Expect = 8e-04
 Identities = 17/24 (70%), Positives = 22/24 (91%)
 Frame = +2

Query: 323 KEWRESYSEFKRKVAQCVRKSQED 394
           K  RE+Y+EFK+KVAQCVR+SQE+
Sbjct: 141 KMQRENYAEFKKKVAQCVRRSQEE 164


>AL110500-10|CAB60431.1|  170|Caenorhabditis elegans Hypothetical
           protein Y87G2A.9 protein.
          Length = 170

 Score = 54.8 bits (126), Expect = 6e-08
 Identities = 25/40 (62%), Positives = 31/40 (77%)
 Frame = +1

Query: 1   VISMLADPNDESPANVDAAKEWRERYSEFKKKVARCVRKS 120
           V+SMLA+PNDESPANV AAK WRE  ++F+K     VRK+
Sbjct: 123 VVSMLAEPNDESPANVSAAKMWREDRAQFEKIADSLVRKT 162


>AC025726-12|AAK73914.3|  243|Caenorhabditis elegans Ubiquitin
           conjugating enzyme protein3 protein.
          Length = 243

 Score = 36.7 bits (81), Expect = 0.017
 Identities = 20/46 (43%), Positives = 32/46 (69%), Gaps = 4/46 (8%)
 Frame = +1

Query: 1   VISMLADPNDESPANVDAA---KEWRE-RYSEFKKKVARCVRKSQE 126
           VIS+L +PN  SPANVDA+   ++W+E +  E+ K V + V +S++
Sbjct: 128 VISLLNEPNTSSPANVDASVMYRKWKEDQDPEYAKIVTKQVEESKK 173


>U08139-1|AAA83388.1|  192|Caenorhabditis elegans ubc-1 protein.
          Length = 192

 Score = 34.7 bits (76), Expect = 0.069
 Identities = 16/38 (42%), Positives = 26/38 (68%)
 Frame = +1

Query: 7   SMLADPNDESPANVDAAKEWRERYSEFKKKVARCVRKS 120
           S+L +PN  SPAN  AA+ ++E   E++K+V + V +S
Sbjct: 111 SLLDEPNPNSPANSLAAQLYQENRREYEKRVQQIVEQS 148


>AF045638-8|AAC02561.2|  192|Caenorhabditis elegans Ubiquitin
           conjugating enzyme protein1 protein.
          Length = 192

 Score = 34.7 bits (76), Expect = 0.069
 Identities = 16/38 (42%), Positives = 26/38 (68%)
 Frame = +1

Query: 7   SMLADPNDESPANVDAAKEWRERYSEFKKKVARCVRKS 120
           S+L +PN  SPAN  AA+ ++E   E++K+V + V +S
Sbjct: 111 SLLDEPNPNSPANSLAAQLYQENRREYEKRVQQIVEQS 148


>Z92784-2|CAB07193.3| 2029|Caenorhabditis elegans Hypothetical
           protein F31C3.3 protein.
          Length = 2029

 Score = 34.3 bits (75), Expect = 0.091
 Identities = 14/54 (25%), Positives = 29/54 (53%)
 Frame = +2

Query: 200 ANILLQTLKNVIHLASPYDPLTPNPHTSTADVFAYSVSFLQKEWRESYSEFKRK 361
           A++ L   +  I +   +DPL+P P  + + ++A +V F   EW  ++ ++  K
Sbjct: 814 ADVTLHGTEKCIQMMKAFDPLSPIPEQNYSTLWARAVEFDVDEWTVTFKDYPMK 867


>Z66520-3|CAA91389.2|  160|Caenorhabditis elegans Hypothetical
           protein F49E12.4 protein.
          Length = 160

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +1

Query: 1   VISMLADPNDESPANVDAAKEWRERYSEFKKKVARCVRK 117
           +I +L +P+   P N+DAA ++     EF KK     +K
Sbjct: 120 LIVLLNEPDLSRPVNIDAAHDYIHNKVEFVKKSTELAKK 158


>U56961-6|AAK39299.1|  497|Caenorhabditis elegans Hypothetical
           protein T19D7.1 protein.
          Length = 497

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +1

Query: 394 LFLITVPFFIICLDCESDW*DVVRTLSGR 480
           + LI +P  ++C DC SD  DV+  L GR
Sbjct: 75  ILLIFIPIVVLCDDCTSDE-DVIADLLGR 102


>AC006693-3|AAF60377.1|  455|Caenorhabditis elegans Skn related
           protein 1 protein.
          Length = 455

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -2

Query: 515 KSIEYSLWARRGRPLSVLTTSHQSLSQSKQIMK 417
           +SI+  L +  G P+S    S  SLS+ KQ++K
Sbjct: 386 QSIDEQLASDNGLPVSAFQISEMSLSEVKQVLK 418


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,597,899
Number of Sequences: 27780
Number of extensions: 387870
Number of successful extensions: 993
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 964
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 993
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1735436670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)