Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00069
         (738 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g46460.1 68416.m05037 ubiquitin-conjugating enzyme 13 (UBC13)...    78   7e-15
At5g59300.1 68418.m07430 ubiquitin-conjugating enzyme 7 (UBC7) E...    77   2e-14
At3g55380.1 68416.m06151 ubiquitin-conjugating enzyme 14 (UBC14)...    74   1e-13
At5g62540.1 68418.m07849 ubiquitin-conjugating enzyme 3 (UBC3) E...    40   0.002
At2g02760.1 68415.m00219 ubiquitin-conjugating enzyme 2 (UBC2) E...    37   0.016
At1g14400.2 68414.m01708 ubiquitin-conjugating enzyme 1 (UBC1) E...    36   0.021
At1g14400.1 68414.m01707 ubiquitin-conjugating enzyme 1 (UBC1) E...    36   0.021
At1g13920.1 68414.m01633 remorin family protein contains Pfam do...    35   0.065
At3g20520.1 68416.m02598 glycerophosphoryl diester phosphodieste...    29   2.4  
At1g50490.1 68414.m05662 ubiquitin-conjugating enzyme 20 (UBC20)...    29   2.4  
At1g50750.1 68414.m05707 expressed protein                             29   3.2  
At3g20060.1 68416.m02537 ubiquitin-conjugating enzyme 19 (UBC19)...    28   5.6  
At1g64790.1 68414.m07346 translational activator family protein ...    27   9.8  
At1g48490.1 68414.m05420 protein kinase, putative similar to inc...    27   9.8  

>At3g46460.1 68416.m05037 ubiquitin-conjugating enzyme 13 (UBC13)
           E2; identical to gi:992706
          Length = 166

 Score = 77.8 bits (183), Expect = 7e-15
 Identities = 34/42 (80%), Positives = 39/42 (92%)
 Frame = +1

Query: 1   VISMLADPNDESPANVDAAKEWRERYSEFKKKVARCVRKSQE 126
           +ISML+ PNDESPANV+AAKEWRE+  EFKKKV+RCVRKSQE
Sbjct: 123 IISMLSGPNDESPANVEAAKEWREKRDEFKKKVSRCVRKSQE 164



 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 17/23 (73%), Positives = 20/23 (86%)
 Frame = +2

Query: 323 KEWRESYSEFKRKVAQCVRKSQE 391
           KEWRE   EFK+KV++CVRKSQE
Sbjct: 142 KEWREKRDEFKKKVSRCVRKSQE 164


>At5g59300.1 68418.m07430 ubiquitin-conjugating enzyme 7 (UBC7) E2;
           identical to gi:992703, SP:P42747
          Length = 198

 Score = 76.6 bits (180), Expect = 2e-14
 Identities = 33/42 (78%), Positives = 39/42 (92%)
 Frame = +1

Query: 1   VISMLADPNDESPANVDAAKEWRERYSEFKKKVARCVRKSQE 126
           +ISML+ PNDESPANV+AAKEWR++  EFKKKV+RCVRKSQE
Sbjct: 155 IISMLSGPNDESPANVEAAKEWRDKRDEFKKKVSRCVRKSQE 196



 Score = 41.1 bits (92), Expect = 7e-04
 Identities = 16/23 (69%), Positives = 20/23 (86%)
 Frame = +2

Query: 323 KEWRESYSEFKRKVAQCVRKSQE 391
           KEWR+   EFK+KV++CVRKSQE
Sbjct: 174 KEWRDKRDEFKKKVSRCVRKSQE 196


>At3g55380.1 68416.m06151 ubiquitin-conjugating enzyme 14 (UBC14)
           E2; UbcAT3; identical to gi:2129757, S46656
          Length = 167

 Score = 73.7 bits (173), Expect = 1e-13
 Identities = 31/42 (73%), Positives = 39/42 (92%)
 Frame = +1

Query: 1   VISMLADPNDESPANVDAAKEWRERYSEFKKKVARCVRKSQE 126
           +ISML+ PNDESPANV+AAKEWR+  +EF+KKV+RCVR+SQE
Sbjct: 124 IISMLSGPNDESPANVEAAKEWRDNRAEFRKKVSRCVRRSQE 165



 Score = 39.5 bits (88), Expect = 0.002
 Identities = 14/23 (60%), Positives = 22/23 (95%)
 Frame = +2

Query: 323 KEWRESYSEFKRKVAQCVRKSQE 391
           KEWR++ +EF++KV++CVR+SQE
Sbjct: 143 KEWRDNRAEFRKKVSRCVRRSQE 165


>At5g62540.1 68418.m07849 ubiquitin-conjugating enzyme 3 (UBC3) E2;
           identical to gi:431261, SP:P42746
          Length = 150

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 17/38 (44%), Positives = 25/38 (65%)
 Frame = +1

Query: 7   SMLADPNDESPANVDAAKEWRERYSEFKKKVARCVRKS 120
           S+L DPN +SPAN +AA+ + E   E+ +KV   V +S
Sbjct: 111 SLLCDPNPDSPANAEAARLFSENKREYNRKVIEIVEQS 148


>At2g02760.1 68415.m00219 ubiquitin-conjugating enzyme 2 (UBC2) E2;
           identical to gi:2689242, SP:P42745
          Length = 152

 Score = 36.7 bits (81), Expect = 0.016
 Identities = 16/38 (42%), Positives = 24/38 (63%)
 Frame = +1

Query: 7   SMLADPNDESPANVDAAKEWRERYSEFKKKVARCVRKS 120
           S+L DPN  SPAN +AA+ + E   E+ ++V   V +S
Sbjct: 111 SLLCDPNPNSPANSEAARMFSESKREYNRRVREVVEQS 148


>At1g14400.2 68414.m01708 ubiquitin-conjugating enzyme 1 (UBC1) E2;
           identical to gi:431259, SP:P25865
          Length = 152

 Score = 36.3 bits (80), Expect = 0.021
 Identities = 16/38 (42%), Positives = 24/38 (63%)
 Frame = +1

Query: 7   SMLADPNDESPANVDAAKEWRERYSEFKKKVARCVRKS 120
           S+L DPN  SPAN +AA+ + E   E+ ++V   V +S
Sbjct: 111 SLLCDPNPNSPANSEAARMYSESKREYNRRVRDVVEQS 148


>At1g14400.1 68414.m01707 ubiquitin-conjugating enzyme 1 (UBC1) E2;
           identical to gi:431259, SP:P25865
          Length = 152

 Score = 36.3 bits (80), Expect = 0.021
 Identities = 16/38 (42%), Positives = 24/38 (63%)
 Frame = +1

Query: 7   SMLADPNDESPANVDAAKEWRERYSEFKKKVARCVRKS 120
           S+L DPN  SPAN +AA+ + E   E+ ++V   V +S
Sbjct: 111 SLLCDPNPNSPANSEAARMYSESKREYNRRVRDVVEQS 148


>At1g13920.1 68414.m01633 remorin family protein contains Pfam
           domain, PF03763: Remorin, C-terminal region
          Length = 345

 Score = 34.7 bits (76), Expect = 0.065
 Identities = 22/91 (24%), Positives = 45/91 (49%), Gaps = 2/91 (2%)
 Frame = +2

Query: 77  IRNSKRKLPDVLGKVKKIAS--RSKRIFRKEYIYC*KRAIVTPANILLQTLKNVIHLASP 250
           I+ ++RK P    K++++ S  R K++  ++ +   K     P+N L +     +   S 
Sbjct: 5   IKQTRRKHPASQEKIREVGSSTREKKVSARKSVSF-KEDKKKPSNWLQKQFSRQMSGQS- 62

Query: 251 YDPLTPNPHTSTADVFAYSVSFLQKEWRESY 343
           YDP+    H +     AY+++  ++ W E+Y
Sbjct: 63  YDPIGEMDHAAAVAATAYAIATFEETWLENY 93


>At3g20520.1 68416.m02598 glycerophosphoryl diester
           phosphodiesterase family protein contains Pfam PF03009 :
           Glycerophosphoryl diester phosphodiesterase family;
           similar to glycerophosphodiester phosphodiesterase
           (GI:1399038) [Borrelia hermsii]
          Length = 729

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = +1

Query: 385 PRGLFLITVPFFIICLDCESDW*DVVRTLSGRP 483
           PR +FLI + FFI+     S W    +TLSG+P
Sbjct: 4   PRVIFLILITFFILQTAFSSSW----QTLSGKP 32


>At1g50490.1 68414.m05662 ubiquitin-conjugating enzyme 20 (UBC20)
           nearly identical to ubiquitin-conjugating enzyme UBC20
           [Arabidopsis thaliana] GI:22530867; contains Pfam
           profile PF00179: Ubiquitin-conjugating enzyme
          Length = 180

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +1

Query: 7   SMLADPNDESPANVDAAKEWRERYSEFKKKVAR 105
           S+L +PN  SP N  AA+ W  +  E++K V +
Sbjct: 142 SLLGEPNISSPLNTQAAQLWSNQ-EEYRKMVEK 173


>At1g50750.1 68414.m05707 expressed protein
          Length = 816

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 15/60 (25%), Positives = 30/60 (50%)
 Frame = +2

Query: 29  MRVPLMLMLQKNGENDIRNSKRKLPDVLGKVKKIASRSKRIFRKEYIYC*KRAIVTPANI 208
           + +   L L K   +D+RNS R   + LGK+ ++ + +  +   + +   +  IV P+ I
Sbjct: 510 LSIAQFLRLNKKKYSDVRNSGRDASEPLGKISRVEADNNDLGTFQKLASIRDEIVPPSEI 569


>At3g20060.1 68416.m02537 ubiquitin-conjugating enzyme 19 (UBC19)
           nearly identical to ubiquitin-conjugating enzyme UBC19
           [Arabidopsis thaliana] GI:22530865; contains Pfam
           profile PF00179: Ubiquitin-conjugating enzyme
          Length = 181

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +1

Query: 7   SMLADPNDESPANVDAAKEWRERYSEFKKKVAR 105
           S+L +PN  SP N  AA+ W  +  E++K V +
Sbjct: 143 SLLGEPNISSPLNNQAAQLWSNQ-EEYRKMVEK 174


>At1g64790.1 68414.m07346 translational activator family protein
            similar to HsGCN1 [Homo sapiens] GI:2282576
          Length = 2440

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = -2

Query: 467  VLTTSHQSLSQSKQI--MKKGTVIRNNPLGSFSHTVLLSF*TPN 342
            VLT +H  +  + Q+   + G+VI+N  + S   T+LL+   PN
Sbjct: 1319 VLTDTHPKVQSAGQLALQQVGSVIKNPEISSLVPTLLLALTDPN 1362


>At1g48490.1 68414.m05420 protein kinase, putative similar to
           incomplete root hair elongation (IRE) [Arabidopsis
           thaliana] gi|6729346|dbj|BAA89783
          Length = 878

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
 Frame = +1

Query: 25  NDESPANVDAAKEWRERYSEFKKKVAR-CVRKSQEDCF*EQKDI*KRI 165
           + ESPAN+D    W+   S   K V    V K Q D   E   + K++
Sbjct: 97  DSESPANIDKMSSWKRLPSPASKGVQEAAVSKEQNDRKVEPPQVVKKL 144


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,110,441
Number of Sequences: 28952
Number of extensions: 340425
Number of successful extensions: 858
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 822
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 858
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1624036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)