Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00068
(748 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 161 7e-41
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 161 1e-40
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 161 1e-40
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 97 2e-21
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 94 2e-20
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 73 4e-14
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 37 0.003
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 36 0.008
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 36 0.008
SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces p... 35 0.011
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 34 0.019
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 33 0.033
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 32 0.076
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 31 0.17
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 31 0.23
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 29 0.53
SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|c... 27 2.1
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 27 3.8
SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces p... 26 5.0
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 26 5.0
SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomy... 26 6.6
SPAC4D7.09 |tif223||translation initiation factor eIF2B|Schizosa... 26 6.6
SPCC16C4.08c |skb15||Shk1 kinase binding protein 15|Schizosaccha... 26 6.6
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi... 26 6.6
SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr 1||... 25 8.7
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb... 25 8.7
SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos... 25 8.7
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 161 bits (392), Expect = 7e-41
Identities = 75/85 (88%), Positives = 80/85 (94%)
Frame = +3
Query: 255 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 434
IDIALWKFET KY VT+IDAPGHRDFIKNMITGTSQADCAVLI+ GTGEFEAGISK+GQ
Sbjct: 73 IDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAVLIIGGGTGEFEAGISKDGQ 132
Query: 435 TREHALLAFTLGVKQLIVGVNKMDS 509
TREHALLA+TLGVKQLIV VNKMD+
Sbjct: 133 TREHALLAYTLGVKQLIVAVNKMDT 157
Score = 149 bits (361), Expect = 4e-37
Identities = 68/72 (94%), Positives = 70/72 (97%)
Frame = +1
Query: 40 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 219
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 220 DKLKAERERGIT 255
DKLKAERERGIT
Sbjct: 61 DKLKAERERGIT 72
Score = 109 bits (263), Expect = 3e-25
Identities = 45/76 (59%), Positives = 60/76 (78%)
Frame = +2
Query: 521 YSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEG 700
+S+ RFEEI KE S++IKK+G+NP V FVP+SG+ GDNM+EP+T MPW++GWQ E K G
Sbjct: 160 WSQARFEEIVKETSNFIKKVGFNPKTVPFVPVSGFQGDNMIEPTTNMPWYQGWQKETKAG 219
Query: 701 KADGKCLIEALDAILP 748
GK L+EA+D+I P
Sbjct: 220 VVKGKTLLEAIDSIEP 235
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 161 bits (391), Expect = 1e-40
Identities = 74/85 (87%), Positives = 80/85 (94%)
Frame = +3
Query: 255 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 434
IDIALWKFET KY VT+IDAPGHRDFIKNMITGTSQADCA+LI+ GTGEFEAGISK+GQ
Sbjct: 73 IDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGTGEFEAGISKDGQ 132
Query: 435 TREHALLAFTLGVKQLIVGVNKMDS 509
TREHALLA+TLGVKQLIV VNKMD+
Sbjct: 133 TREHALLAYTLGVKQLIVAVNKMDT 157
Score = 149 bits (361), Expect = 4e-37
Identities = 68/72 (94%), Positives = 70/72 (97%)
Frame = +1
Query: 40 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 219
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 220 DKLKAERERGIT 255
DKLKAERERGIT
Sbjct: 61 DKLKAERERGIT 72
Score = 109 bits (263), Expect = 3e-25
Identities = 45/76 (59%), Positives = 60/76 (78%)
Frame = +2
Query: 521 YSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEG 700
+S+ RFEEI KE S++IKK+G+NP V FVP+SG+ GDNM+EP+T MPW++GWQ E K G
Sbjct: 160 WSQARFEEIVKETSNFIKKVGFNPKTVPFVPVSGFQGDNMIEPTTNMPWYQGWQKETKAG 219
Query: 701 KADGKCLIEALDAILP 748
GK L+EA+D+I P
Sbjct: 220 VVKGKTLLEAIDSIEP 235
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 161 bits (391), Expect = 1e-40
Identities = 74/85 (87%), Positives = 80/85 (94%)
Frame = +3
Query: 255 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 434
IDIALWKFET KY VT+IDAPGHRDFIKNMITGTSQADCA+LI+ GTGEFEAGISK+GQ
Sbjct: 73 IDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGTGEFEAGISKDGQ 132
Query: 435 TREHALLAFTLGVKQLIVGVNKMDS 509
TREHALLA+TLGVKQLIV VNKMD+
Sbjct: 133 TREHALLAYTLGVKQLIVAVNKMDT 157
Score = 149 bits (361), Expect = 4e-37
Identities = 68/72 (94%), Positives = 70/72 (97%)
Frame = +1
Query: 40 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 219
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 220 DKLKAERERGIT 255
DKLKAERERGIT
Sbjct: 61 DKLKAERERGIT 72
Score = 109 bits (263), Expect = 3e-25
Identities = 45/76 (59%), Positives = 60/76 (78%)
Frame = +2
Query: 521 YSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEG 700
+S+ RFEEI KE S++IKK+G+NP V FVP+SG+ GDNM+EP+T MPW++GWQ E K G
Sbjct: 160 WSQARFEEIVKETSNFIKKVGFNPKTVPFVPVSGFQGDNMIEPTTNMPWYQGWQKETKAG 219
Query: 701 KADGKCLIEALDAILP 748
GK L+EA+D+I P
Sbjct: 220 VVKGKTLLEAIDSIEP 235
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 97.1 bits (231), Expect = 2e-21
Identities = 42/84 (50%), Positives = 59/84 (70%)
Frame = +3
Query: 255 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 434
+++ FET +++DAPGH+ ++ NMI G SQAD VL+++A GEFEAG + GQ
Sbjct: 304 VEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQ 363
Query: 435 TREHALLAFTLGVKQLIVGVNKMD 506
TREHA+LA T G+ L+V +NKMD
Sbjct: 364 TREHAVLARTQGINHLVVVINKMD 387
Score = 84.6 bits (200), Expect = 1e-17
Identities = 37/68 (54%), Positives = 50/68 (73%)
Frame = +1
Query: 52 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 231
K H+NIV IGHVD+GKST G++++ G +DKRT+EK E+EA+E GK S+ +W LD
Sbjct: 236 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTS 295
Query: 232 AERERGIT 255
ERE+G T
Sbjct: 296 EEREKGKT 303
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 93.9 bits (223), Expect = 2e-20
Identities = 44/87 (50%), Positives = 57/87 (65%)
Frame = +3
Query: 255 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 434
+D+A FE+ K I DAPGHRDFI MI G S AD AVL+V + FE G +NGQ
Sbjct: 243 MDVASTTFESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQ 302
Query: 435 TREHALLAFTLGVKQLIVGVNKMDSLN 515
TREHA L LG+ +++V VNK+D ++
Sbjct: 303 TREHAYLLRALGISEIVVSVNKLDLMS 329
Score = 79.8 bits (188), Expect = 4e-16
Identities = 34/68 (50%), Positives = 48/68 (70%)
Frame = +1
Query: 52 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 231
K +++VV GHVDSGKST G ++++ G I+ R+++K EA GKGSF YAW+LD +
Sbjct: 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTE 234
Query: 232 AERERGIT 255
ER RG+T
Sbjct: 235 EERARGVT 242
Score = 45.2 bits (102), Expect = 1e-05
Identities = 24/55 (43%), Positives = 34/55 (61%), Gaps = 3/55 (5%)
Frame = +2
Query: 521 YSEPRFEEIKKEVSSY-IKKIGYNPAAVAFVPISGWHGDNML--EPSTKMPWFKG 676
+SE RF+EIK VS + IK +G+ + V FVPIS G N++ + S W+KG
Sbjct: 330 WSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKG 384
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 72.9 bits (171), Expect = 4e-14
Identities = 35/78 (44%), Positives = 52/78 (66%)
Frame = +3
Query: 273 KFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHAL 452
++ET+ + +D PGH D+IKNMITG + D A+++V+A G+ QTREH L
Sbjct: 110 EYETANRHYAHVDCPGHADYIKNMITGAATMDGAIIVVSATDGQMP-------QTREHLL 162
Query: 453 LAFTLGVKQLIVGVNKMD 506
LA +GVKQ++V +NK+D
Sbjct: 163 LARQVGVKQIVVYINKVD 180
Score = 38.3 bits (85), Expect = 0.001
Identities = 26/70 (37%), Positives = 35/70 (50%)
Frame = +1
Query: 46 KEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 225
++K H+NI IGHVD GK+T T I KC ++G+ SF +DK
Sbjct: 49 RKKPHVNIGTIGHVDHGKTTLTA-AITKC--------------LSDLGQASFMDYSQIDK 93
Query: 226 LKAERERGIT 255
E+ RGIT
Sbjct: 94 APEEKARGIT 103
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 37.1 bits (82), Expect = 0.003
Identities = 20/71 (28%), Positives = 34/71 (47%)
Frame = +3
Query: 294 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV 473
+V+ +D PGH + M+ G + D A+L++A QT EH + +
Sbjct: 109 HVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMQL 162
Query: 474 KQLIVGVNKMD 506
K +I+ NK+D
Sbjct: 163 KHIIILQNKVD 173
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 35.5 bits (78), Expect = 0.008
Identities = 17/32 (53%), Positives = 19/32 (59%)
Frame = +1
Query: 40 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 135
MGK N+ VI HVD GKST T L+ K G
Sbjct: 13 MGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAG 44
Score = 27.9 bits (59), Expect = 1.6
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +3
Query: 291 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 386
+ V +ID+PGH DF + D A+++V
Sbjct: 98 FLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 35.5 bits (78), Expect = 0.008
Identities = 17/32 (53%), Positives = 19/32 (59%)
Frame = +1
Query: 40 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 135
MGK N+ VI HVD GKST T L+ K G
Sbjct: 13 MGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAG 44
Score = 27.9 bits (59), Expect = 1.6
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +3
Query: 291 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 386
+ V +ID+PGH DF + D A+++V
Sbjct: 98 FLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 704
Score = 35.1 bits (77), Expect = 0.011
Identities = 26/105 (24%), Positives = 47/105 (44%), Gaps = 4/105 (3%)
Frame = -3
Query: 431 TVLRDTSFEFTGTGSYDEHSAISLRGSCDHVLDEISVSRSINDGNIVLASFELPESNI-- 258
+V+ +T T ++ + +SL SC L + S + + S + SN
Sbjct: 109 SVMNETDSSSTSVEDVNKENILSLNDSCLIKLSDDEASNKSSRSSTPRNSIKSNSSNQGH 168
Query: 257 -DV-IPRSRSAFSLSNTQAYLKDPLPISWASFSNFSMVRLSIPPH 129
D+ IP+ A S+ N++ + +D LP + S V+L +P H
Sbjct: 169 GDIPIPKKNPARSVCNSKLFNEDTLPAEFEEVSISPPVKLELPTH 213
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 34.3 bits (75), Expect = 0.019
Identities = 21/57 (36%), Positives = 29/57 (50%)
Frame = +3
Query: 276 FETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREH 446
FE S Y + IID PGH DF + D AVL++ A +G I+ + Q R +
Sbjct: 141 FEKS-YNINIIDTPGHIDFTIEVERALRVLDGAVLVLCAVSGVQSQTITVDRQMRRY 196
Score = 33.9 bits (74), Expect = 0.025
Identities = 22/64 (34%), Positives = 34/64 (53%)
Frame = +1
Query: 64 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 243
NI + H+DSGK+T T ++Y G I K+ E+ +G +D ++ ERE
Sbjct: 61 NIGISAHIDSGKTTFTERVLYYTGRI---------KDIHEV-RGKDNVGAKMDFMELERE 110
Query: 244 RGIT 255
+GIT
Sbjct: 111 KGIT 114
>SPBC1271.15c |||translation initiation factor
IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 33.5 bits (73), Expect = 0.033
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +3
Query: 276 FETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 401
F+ ++T +D PGH F G + AD VL+VA G
Sbjct: 215 FDKGSKFITFLDTPGHMAFEAMRKRGANIADIVVLVVAGDDG 256
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 32.3 bits (70), Expect = 0.076
Identities = 22/64 (34%), Positives = 32/64 (50%)
Frame = +1
Query: 64 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 243
N+ +I H+D+GK+T T ++Y G F + G V+D L AER+
Sbjct: 30 NVGIIAHIDAGKTTLTEKMLYYGG---------FTSHFGNVDTGD----TVMDYLPAERQ 76
Query: 244 RGIT 255
RGIT
Sbjct: 77 RGIT 80
Score = 29.9 bits (64), Expect = 0.40
Identities = 26/84 (30%), Positives = 38/84 (45%)
Frame = +3
Query: 255 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 434
I+ A F + +ID PGH DF + + D AV I+ + AG+ Q
Sbjct: 81 INSAAISFTWRNQRINLIDTPGHADFTFEVERSVAVLDGAVAII-----DGSAGV--EAQ 133
Query: 435 TREHALLAFTLGVKQLIVGVNKMD 506
T+ A G+ ++I VNKMD
Sbjct: 134 TKVVWKQATKRGIPKVIF-VNKMD 156
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 31.1 bits (67), Expect = 0.17
Identities = 23/74 (31%), Positives = 37/74 (50%)
Frame = +3
Query: 291 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLG 470
Y + +ID+PGH DF + + + D A ++V A G I+ Q A+
Sbjct: 94 YLINLIDSPGHVDFSSEVSSASRLCDGAFVLVDAVEGVCSQTITVLRQ-------AWIDR 146
Query: 471 VKQLIVGVNKMDSL 512
+K ++V +NKMD L
Sbjct: 147 IKVILV-INKMDRL 159
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 30.7 bits (66), Expect = 0.23
Identities = 12/45 (26%), Positives = 23/45 (51%)
Frame = +3
Query: 267 LWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 401
++ + Y + +ID PGH DF ++ + + +L+V A G
Sbjct: 116 IYYYHGQSYLLNLIDTPGHVDFRAEVMHSLAACEGCILLVDASQG 160
Score = 27.9 bits (59), Expect = 1.6
Identities = 22/64 (34%), Positives = 30/64 (46%)
Frame = +1
Query: 64 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 243
N VI H+D GKST + ++ G I++ + F LDKL+ ER
Sbjct: 60 NWAVIAHIDHGKSTLSDCILKLTGVINEHNF-----------RNQF-----LDKLEVERR 103
Query: 244 RGIT 255
RGIT
Sbjct: 104 RGIT 107
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 29.5 bits (63), Expect = 0.53
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +3
Query: 303 IIDAPGHRDFIKNMITGTSQADCAVLIV 386
IID PGH F GTS + A+L++
Sbjct: 553 IIDTPGHESFTNLRSRGTSLCNIAILVI 580
>SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 367
Score = 27.5 bits (58), Expect = 2.1
Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Frame = +3
Query: 522 TVSPDLRKSRRKYPHTSRRLATTQLL---SLSCPFLDGTETTCWSLQPKCLGSRDGRWSV 692
+ +PD+ ++PHT +R +T + L LSC + +E + P G +D + +
Sbjct: 145 STNPDVLYMSSQHPHTQQRYSTLKRLMVRCLSCEYSTLSEASDSMSNPLFFGDQDNGYVI 204
Query: 693 KKA 701
++
Sbjct: 205 SQS 207
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 26.6 bits (56), Expect = 3.8
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 306 IDAPGHRDFIKNMITGTSQADCAVLIV 386
ID PGH DF+ + + +D VL+V
Sbjct: 214 IDTPGHVDFVDEVAAPMAISDGVVLVV 240
>SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 926
Score = 26.2 bits (55), Expect = 5.0
Identities = 26/79 (32%), Positives = 36/79 (45%)
Frame = +3
Query: 384 VAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSLNHHTVSPDLRKSRRKYP 563
VA GT E GI NG E+A+ A +I V++ ++H + KSRR+YP
Sbjct: 47 VAEGTAE---GIVSNG---EYAVGAMGAAPTNIIGSVDQQPPVSHTS-----HKSRRQYP 95
Query: 564 HTSRRLATTQLLSLSCPFL 620
L T S + P L
Sbjct: 96 AEVFELTNTLAASPAPPSL 114
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 26.2 bits (55), Expect = 5.0
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Frame = +3
Query: 492 VNKMDSLNHHTVSPDLRKSRRKYPHTSRRLATTQLLSLSCPF-LDGTETTCWSLQPKCLG 668
+ KMDSLN+ PD K R+K H S + ++L + + ++ L+
Sbjct: 4 IQKMDSLNNKEGQPD--KKRKK--HESEKEGENEVLEIDVTKPVPPSKKLMRKLRKAGKI 59
Query: 669 SRDGRW---SVKKAKLTENASLK 728
+DG W ++++AK E LK
Sbjct: 60 DKDGNWTPEALEEAKKKEEKRLK 82
>SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 384
Score = 25.8 bits (54), Expect = 6.6
Identities = 17/60 (28%), Positives = 27/60 (45%)
Frame = -3
Query: 314 SINDGNIVLASFELPESNIDVIPRSRSAFSLSNTQAYLKDPLPISWASFSNFSMVRLSIP 135
S++ + L S+ P S + A ++YL+ PL S S S + +R SIP
Sbjct: 305 SVDSASTALNSYSTPNSVSRKLTNLTPAARRLVARSYLRSPLHGSSPSASRHTALRTSIP 364
>SPAC4D7.09 |tif223||translation initiation factor
eIF2B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 468
Score = 25.8 bits (54), Expect = 6.6
Identities = 22/66 (33%), Positives = 30/66 (45%)
Frame = -3
Query: 380 EHSAISLRGSCDHVLDEISVSRSINDGNIVLASFELPESNIDVIPRSRSAFSLSNTQAYL 201
EH+A+ L S +L IS R N GNI L S + + S + L+ + A
Sbjct: 5 EHAALPLASS-PSILGPISGGR--NRGNIQLQSIPIEFQAVVFAGFGNSLYPLTGSDALP 61
Query: 200 KDPLPI 183
K LPI
Sbjct: 62 KALLPI 67
>SPCC16C4.08c |skb15||Shk1 kinase binding protein
15|Schizosaccharomyces pombe|chr 3|||Manual
Length = 341
Score = 25.8 bits (54), Expect = 6.6
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +1
Query: 202 KYAWVL-DKLKAERERGITSILLSGSSKLASTM 297
K +W+L LK+ +GIT I + S KLA T+
Sbjct: 106 KGSWLLVHTLKSSSHKGITGIAVHPSEKLALTV 138
>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 25.8 bits (54), Expect = 6.6
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = -1
Query: 247 HAHAQPLVCPIPKHI*RILYPFPGPPSRTSRWY 149
H+H PL P+P +L P P P S WY
Sbjct: 135 HSHHPPLHNPLPVSCQPVLRP-PPVPQVPSHWY 166
>SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 380
Score = 25.4 bits (53), Expect = 8.7
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Frame = +3
Query: 255 IDIALWKFETSKYYV--TIIDAPGHRDFIKN 341
I+I + E +++ T+ID PG DFI N
Sbjct: 73 IEITKAELEEKNFHLRLTVIDTPGFGDFINN 103
>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 662
Score = 25.4 bits (53), Expect = 8.7
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = -1
Query: 226 VCPIPKHI*RILYPFPGPPSRTSRWYVCQYHHICRSSDQWWWT 98
V +PK I I++ F P S S C+Y S D W T
Sbjct: 31 VLNLPKEILIIIFSFLDPRSLLSAQCTCKYWKKLLSDDLSWRT 73
>SPBC11B10.05c |rsp1||random septum position protein
Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 494
Score = 25.4 bits (53), Expect = 8.7
Identities = 18/65 (27%), Positives = 29/65 (44%)
Frame = +2
Query: 482 HRRSKQNGFTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKM 661
HR +G E S F+E+ SYI +P +G+ +N+++P +
Sbjct: 143 HRSFSASGKMEKNNS---FKEVSTS-KSYISSGYLHPKTSPIFKKNGYATENVVDPISSS 198
Query: 662 PWFKG 676
P FKG
Sbjct: 199 PRFKG 203
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,173,341
Number of Sequences: 5004
Number of extensions: 67994
Number of successful extensions: 275
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 241
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 272
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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