Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00068
(748 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09) 114 8e-26
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43) 101 6e-22
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018) 97 1e-20
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0) 78 7e-15
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.061
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.061
SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26) 33 0.19
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0) 32 0.43
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34) 31 1.3
SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10) 30 2.3
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0) 30 2.3
SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_41020| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_2439| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_21189| Best HMM Match : PCI (HMM E-Value=8.2) 29 5.3
SB_57706| Best HMM Match : DUF678 (HMM E-Value=5.7) 28 7.0
SB_37907| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_29733| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_19088| Best HMM Match : PSGP (HMM E-Value=2.5) 28 7.0
SB_13701| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_25339| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_43213| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.2
SB_10056| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=7.7e-05) 28 9.2
SB_34931| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.46) 28 9.2
>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
Length = 123
Score = 114 bits (274), Expect = 8e-26
Identities = 53/95 (55%), Positives = 69/95 (72%), Gaps = 2/95 (2%)
Frame = +3
Query: 255 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 434
+D+ L +F+T +T++DAPGH+DFI NMITG +QAD A+L+V A TGEFEAG GQ
Sbjct: 1 MDVGLTRFQTKNKVITLMDAPGHKDFIPNMITGAAQADVAILVVDAITGEFEAGFESGGQ 60
Query: 435 TREHALLAFTLGVKQLIVGVNKMDS--LNHHTVSP 533
TREHA+L +LGV QLIV +NK+D L +H P
Sbjct: 61 TREHAILVRSLGVTQLIVAINKLDMVVLGYHRGKP 95
>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
Length = 547
Score = 101 bits (242), Expect = 6e-22
Identities = 43/84 (51%), Positives = 61/84 (72%)
Frame = +3
Query: 255 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 434
+++ F+T + T++DAPGH+ F+ NMI+G +QAD VL+++A GEFE G + GQ
Sbjct: 210 VEVGRAAFDTDTKHFTLLDAPGHKSFVPNMISGATQADLGVLVISARKGEFETGFERGGQ 269
Query: 435 TREHALLAFTLGVKQLIVGVNKMD 506
TREHA+LA T GVK L++ VNKMD
Sbjct: 270 TREHAMLAKTAGVKHLVILVNKMD 293
Score = 47.2 bits (107), Expect = 1e-05
Identities = 19/44 (43%), Positives = 31/44 (70%)
Frame = +1
Query: 124 YKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGIT 255
Y G +DKRT+EK+E+EA+E + ++ +W LD + ER++G T
Sbjct: 166 YLTGQVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGNT 209
Score = 33.9 bits (74), Expect = 0.14
Identities = 11/24 (45%), Positives = 21/24 (87%)
Frame = +2
Query: 521 YSEPRFEEIKKEVSSYIKKIGYNP 592
++E R+EEIK +++ ++KK+G+NP
Sbjct: 299 WNEERYEEIKVKLTPFLKKVGFNP 322
>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
Length = 106
Score = 97.1 bits (231), Expect = 1e-20
Identities = 44/49 (89%), Positives = 46/49 (93%)
Frame = +1
Query: 40 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEM 186
M KEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKE+ E+
Sbjct: 1 MPKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKESSEV 49
>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
Length = 322
Score = 78.2 bits (184), Expect = 7e-15
Identities = 34/36 (94%), Positives = 35/36 (97%)
Frame = +3
Query: 255 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQ 362
IDIALWKFET KYYVT+IDAPGHRDFIKNMITGTSQ
Sbjct: 25 IDIALWKFETLKYYVTVIDAPGHRDFIKNMITGTSQ 60
Score = 54.8 bits (126), Expect = 7e-08
Identities = 24/24 (100%), Positives = 24/24 (100%)
Frame = +1
Query: 184 MGKGSFKYAWVLDKLKAERERGIT 255
MGKGSFKYAWVLDKLKAERERGIT
Sbjct: 1 MGKGSFKYAWVLDKLKAERERGIT 24
Score = 44.0 bits (99), Expect = 1e-04
Identities = 21/44 (47%), Positives = 27/44 (61%), Gaps = 6/44 (13%)
Frame = +2
Query: 635 NMLEPSTKMPWFKGWQVER------KEGKADGKCLIEALDAILP 748
NM+ +++MPWFK W +ER KE A G L E LD+ILP
Sbjct: 53 NMITGTSQMPWFKQWTIERVDPATKKEANASGVTLFEGLDSILP 96
>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 545
Score = 35.1 bits (77), Expect = 0.061
Identities = 28/85 (32%), Positives = 40/85 (47%)
Frame = +3
Query: 252 HIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNG 431
HI L K + + +T ID PGH F G + D VL+VAA G ++
Sbjct: 64 HIGAFLVKLPSGEK-ITFIDTPGHAAFNSMRARGANVTDIVVLVVAADDGV----KTQTV 118
Query: 432 QTREHALLAFTLGVKQLIVGVNKMD 506
++ HA+ A LIV +NK+D
Sbjct: 119 ESIRHAMHAKV----PLIVAINKID 139
>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2670
Score = 35.1 bits (77), Expect = 0.061
Identities = 25/64 (39%), Positives = 30/64 (46%)
Frame = +1
Query: 64 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 243
N ++ HVD GKST L+ G I K + K VLDKL+ ERE
Sbjct: 1943 NFSIVAHVDHGKSTLADRLLEVTGTISKSSDNK----------------QVLDKLQVERE 1986
Query: 244 RGIT 255
RGIT
Sbjct: 1987 RGIT 1990
>SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)
Length = 541
Score = 33.5 bits (73), Expect = 0.19
Identities = 18/67 (26%), Positives = 31/67 (46%)
Frame = +3
Query: 306 IDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLI 485
+D PGH + M+ G + D A+L++A QT EH + +K ++
Sbjct: 69 VDCPGHDILMATMLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMKLKHIL 122
Query: 486 VGVNKMD 506
+ NK+D
Sbjct: 123 ILQNKID 129
>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 833
Score = 32.3 bits (70), Expect = 0.43
Identities = 16/32 (50%), Positives = 19/32 (59%)
Frame = +1
Query: 40 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 135
M K+ N+ VI HVD GKST T L+ K G
Sbjct: 12 MDKKLNIRNMSVIAHVDHGKSTLTDSLVSKAG 43
Score = 28.3 bits (60), Expect = 7.0
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +3
Query: 291 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 401
+ + +ID+PGH DF + D A+++V +G
Sbjct: 99 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG 135
>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
Length = 240
Score = 30.7 bits (66), Expect = 1.3
Identities = 22/85 (25%), Positives = 33/85 (38%)
Frame = +3
Query: 261 IALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTR 440
I + + + +D PGH F G D +++VAA QT+
Sbjct: 128 IGAYSVKVGDQKIAFLDTPGHEAFTAMRARGAQVTDLVIIVVAADDDVMP-------QTK 180
Query: 441 EHALLAFTLGVKQLIVGVNKMDSLN 515
E A GV +I +NK+D N
Sbjct: 181 EAISHAQAAGV-PIIFAINKIDKPN 204
>SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)
Length = 783
Score = 29.9 bits (64), Expect = 2.3
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +3
Query: 303 IIDAPGHRDFIKNMITGTSQADCAVLIV 386
IID PGH F G+S D A+L+V
Sbjct: 682 IIDTPGHESFSNLRSRGSSLCDMAILVV 709
>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 359
Score = 29.9 bits (64), Expect = 2.3
Identities = 9/35 (25%), Positives = 19/35 (54%)
Frame = +3
Query: 297 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 401
+ I+D PGH+DF ++ + D ++++ G
Sbjct: 81 INILDTPGHKDFAEDTFRTLTAVDSVIVVIDVAKG 115
>SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 539
Score = 29.5 bits (63), Expect = 3.0
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +1
Query: 55 THINIVVIGHVDSGKSTTTGHLIY 126
T I + V+G+V+SGKST G L Y
Sbjct: 111 TDIRMAVLGNVESGKSTLLGVLTY 134
>SB_41020| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1229
Score = 29.5 bits (63), Expect = 3.0
Identities = 17/57 (29%), Positives = 24/57 (42%)
Frame = -2
Query: 279 RTSREQYRCDTTLTLSL*FVQYPSIFEGSFTHFXXXXXXXLDGTFVNTTTFVDQVTS 109
RT+ TT+T S YPS+ + +F D T N TT V +T+
Sbjct: 226 RTTSTSAVFPTTITPSPNITSYPSLMTSAVGNFTSATSVVFDSTTPNATTLVPSITA 282
Score = 27.9 bits (59), Expect = 9.2
Identities = 16/57 (28%), Positives = 24/57 (42%)
Frame = -2
Query: 279 RTSREQYRCDTTLTLSL*FVQYPSIFEGSFTHFXXXXXXXLDGTFVNTTTFVDQVTS 109
RT+ TT+T S YPS+ + +F D T N TT V +++
Sbjct: 427 RTTSTSAVFPTTITPSPNITSYPSLMTSAVGNFTSATSVVFDSTTPNATTLVPSISA 483
>SB_2439| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 951
Score = 29.1 bits (62), Expect = 4.0
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = +2
Query: 461 HPRCQTAHRRSKQNGFTEPPYSEPRFEEIKKEVSSYIKKIGYN 589
H + + RR ++N + + P+FE++K + +S KKI N
Sbjct: 109 HETTEPSVRRCQRNSVRDIDAAWPKFEKLKSQFNSNSKKISMN 151
>SB_21189| Best HMM Match : PCI (HMM E-Value=8.2)
Length = 125
Score = 28.7 bits (61), Expect = 5.3
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Frame = +2
Query: 431 SNP*ACLARFHPRC-----QTAHRRSKQNGFTEPPYSEPRFEEIKKEVSSYIKKIGYN 589
+N A L RF C ++A RR ++N + + P+F+ +K + S KKI N
Sbjct: 25 NNEFAALKRFLKNCMHETTESAVRRCQRNSVMDIDAAWPKFQRLKSQFSINSKKISMN 82
>SB_57706| Best HMM Match : DUF678 (HMM E-Value=5.7)
Length = 154
Score = 28.3 bits (60), Expect = 7.0
Identities = 18/60 (30%), Positives = 32/60 (53%)
Frame = +1
Query: 193 GSFKYAWVLDKLKAERERGITSILLSGSSKLASTMLPSLMLLDTEISSRT*SQEPLRLIA 372
GSFK ++ + R +TS++L GSS + ST +L + + S ++ P R+I+
Sbjct: 5 GSFKINAQMESSQKSRPARVTSVVLMGSSVIRSTKCATLSKPNAKSSLKS---HPARVIS 61
>SB_37907| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 93
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +2
Query: 461 HPRCQTAHRRSKQNGFTEPPYSEPRFEEIKKEVSSYIKKIGYN 589
H ++A RR ++N + + P+F+ +K + S KKI N
Sbjct: 8 HETTESAVRRCQRNSVMDIDAAWPKFQRLKSQFSINSKKISMN 50
>SB_29733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 360
Score = 28.3 bits (60), Expect = 7.0
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Frame = +3
Query: 471 VKQLIVGVNKMDSLNHHTVSPDLRKSRRKY--PHTSRRLATTQLLSLSCPFLDGTETTCW 644
V Q+ G+N + S T+SP+ R RK P+ R++ T+L ++ P+L T W
Sbjct: 229 VHQMSRGLNAIHSKYMATLSPECRDVLRKLLEPNPQLRISLTEL--MAHPWL--TSKGTW 284
Query: 645 SLQP 656
L+P
Sbjct: 285 PLEP 288
>SB_19088| Best HMM Match : PSGP (HMM E-Value=2.5)
Length = 737
Score = 28.3 bits (60), Expect = 7.0
Identities = 16/57 (28%), Positives = 24/57 (42%)
Frame = -2
Query: 279 RTSREQYRCDTTLTLSL*FVQYPSIFEGSFTHFXXXXXXXLDGTFVNTTTFVDQVTS 109
RT+ TT+T S YPS+ + +F D T N TT V +++
Sbjct: 538 RTTSTSAVFPTTITPSPNITSYPSLMTSAVGNFTSATSVVFDSTTPNATTLVQSISA 594
Score = 27.9 bits (59), Expect = 9.2
Identities = 16/57 (28%), Positives = 24/57 (42%)
Frame = -2
Query: 279 RTSREQYRCDTTLTLSL*FVQYPSIFEGSFTHFXXXXXXXLDGTFVNTTTFVDQVTS 109
RT+ TT+T S YPS+ + +F D T N TT V +++
Sbjct: 337 RTTSTTADFPTTITPSPNITSYPSLMTSAVGNFTSAKSVVFDSTTPNATTLVPSISA 393
>SB_13701| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 476
Score = 28.3 bits (60), Expect = 7.0
Identities = 8/25 (32%), Positives = 14/25 (56%)
Frame = +2
Query: 623 WHGDNMLEPSTKMPWFKGWQVERKE 697
+H DN + PWF+ W +++E
Sbjct: 191 YHNDNKTHSTQTGPWFRAWSNQKRE 215
>SB_25339| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1049
Score = 28.3 bits (60), Expect = 7.0
Identities = 14/61 (22%), Positives = 31/61 (50%)
Frame = +3
Query: 348 TGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSLNHHTV 527
TGT+ D + + G+F++ ++ N + LLA +G+ + G+ +++ HT
Sbjct: 790 TGTNVLDSIISLTPGKIGQFDSSVTMNEDSTSE-LLASIMGLTKTTSGLLVSQTVSTHTT 848
Query: 528 S 530
+
Sbjct: 849 A 849
>SB_43213| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 919
Score = 27.9 bits (59), Expect = 9.2
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -1
Query: 679 PSLEPRHFG*RLQHVVSVPSRNGHESDSSWVVANLLD 569
P+LEP + G L + S S GH+ D+ ++ LL+
Sbjct: 378 PNLEPSYIGKMLATIESTLSAKGHQEDAEEFLSCLLN 414
>SB_10056| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=7.7e-05)
Length = 1960
Score = 27.9 bits (59), Expect = 9.2
Identities = 16/57 (28%), Positives = 24/57 (42%)
Frame = -2
Query: 279 RTSREQYRCDTTLTLSL*FVQYPSIFEGSFTHFXXXXXXXLDGTFVNTTTFVDQVTS 109
RT+ TT+T S YPS+ + +F D T N TT V +++
Sbjct: 226 RTTSTSAVFPTTITPSPNITSYPSLMTSAVGNFTSAKSVVFDSTTPNATTLVPSISA 282
>SB_34931| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.46)
Length = 572
Score = 27.9 bits (59), Expect = 9.2
Identities = 16/57 (28%), Positives = 24/57 (42%)
Frame = -2
Query: 279 RTSREQYRCDTTLTLSL*FVQYPSIFEGSFTHFXXXXXXXLDGTFVNTTTFVDQVTS 109
RT+ TT+T S YPS+ + +F D T N TT V +++
Sbjct: 8 RTTSTSAVFPTTITPSPNITSYPSLMTSAVGNFTSATSVVFDSTTPNATTLVPSISA 64
Score = 27.9 bits (59), Expect = 9.2
Identities = 16/57 (28%), Positives = 24/57 (42%)
Frame = -2
Query: 279 RTSREQYRCDTTLTLSL*FVQYPSIFEGSFTHFXXXXXXXLDGTFVNTTTFVDQVTS 109
RT+ TT+T S YPS+ + +F D T N TT V +++
Sbjct: 410 RTTSTSAVFPTTITPSPNITSYPSLMTSAVGNFTSATSVVFDSTTPNATTLVPSISA 466
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,023,953
Number of Sequences: 59808
Number of extensions: 512090
Number of successful extensions: 1585
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1583
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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