Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00067
(766 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|... 99 8e-22
SPBC1604.08c |imp1||importin alpha|Schizosaccharomyces pombe|chr... 95 1e-20
SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyc... 31 0.24
SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr 2|... 29 0.73
SPBP8B7.10c |||U3 snoRNP-associated protein Utp16 |Schizosacchar... 29 0.96
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho... 28 1.3
SPBC409.05 |skp1|psh1, sph1|SCF ubiquitin ligase complex subunit... 28 1.3
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 28 1.3
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy... 27 2.2
SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces pom... 27 2.9
SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces pom... 27 2.9
SPAC1B1.03c |kap95||karyopherin Kap95|Schizosaccharomyces pombe|... 27 3.9
SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyce... 27 3.9
SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr ... 27 3.9
SPAC1805.15c |pub2||ubiquitin-protein ligase Pub2|Schizosaccharo... 26 5.1
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch... 26 5.1
SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|... 26 5.1
SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr 1|... 26 6.8
SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase |S... 25 9.0
SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces p... 25 9.0
SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint compone... 25 9.0
>SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|chr
3|||Manual
Length = 542
Score = 98.7 bits (235), Expect = 8e-22
Identities = 47/85 (55%), Positives = 64/85 (75%)
Frame = +1
Query: 508 SGILPILVQCLSRADNPALQFETAWALTNIASGTSAQTNKVVHAGAVPVFLQLLMSPHEN 687
+G++P V+ LS +N L+FE +WALTN+ASG+S QT+ VV A AVPVF+ LL S ++
Sbjct: 120 AGVVPRFVEFLSHENN-LLKFEASWALTNVASGSSNQTHVVVEANAVPVFVSLLSSSEQD 178
Query: 688 VCDQAVWALGNIIGDGPVLRDFVIE 762
V +QAVWALGNI GD P+ RD V++
Sbjct: 179 VREQAVWALGNIAGDSPMCRDHVLQ 203
Score = 48.8 bits (111), Expect = 8e-07
Identities = 38/109 (34%), Positives = 55/109 (50%), Gaps = 7/109 (6%)
Frame = +2
Query: 200 KNRMHVFKNAGK-DVDEMRSEGMKSQSS*EKNKREETLQKRRNVPISYSTDEEEID-KNL 373
++R +K G DE+R Q K KREE L KRRN+ EE I +
Sbjct: 10 EHRRQNYKGKGTFQADELRRRRETQQIEIRKQKREENLNKRRNLVDVQEPAEETIPLEQD 69
Query: 374 ATTDLD-EL----VMNAANAENPEAQLAAVQQCRKLLSCDKNPPIDELI 505
DL+ EL ++ A +++ EAQ+ A + RK LS + NPPI ++I
Sbjct: 70 KENDLELELQLPDLLKALYSDDIEAQIQATAKFRKALSKETNPPIQKVI 118
Score = 45.2 bits (102), Expect = 1e-05
Identities = 24/83 (28%), Positives = 42/83 (50%)
Frame = +1
Query: 514 ILPILVQCLSRADNPALQFETAWALTNIASGTSAQTNKVVHAGAVPVFLQLLMSPHENVC 693
++ +L+ ++ PAL+ ++ NI +G QT +++ GA+ L LL SP + V
Sbjct: 295 LVELLMHPSAQVQTPALR-----SVGNIVTGDDVQTQVIINCGALSALLSLLSSPRDGVR 349
Query: 694 DQAVWALGNIIGDGPVLRDFVIE 762
+A W + NI +VIE
Sbjct: 350 KEACWTISNITAGNSSQIQYVIE 372
Score = 40.3 bits (90), Expect = 3e-04
Identities = 21/84 (25%), Positives = 42/84 (50%)
Frame = +1
Query: 508 SGILPILVQCLSRADNPALQFETAWALTNIASGTSAQTNKVVHAGAVPVFLQLLMSPHEN 687
S ++P+L + + D L + WA++ ++ G + + ++ AG ++LLM P
Sbjct: 247 SQVIPVLSKLIYTLDEDVL-VDALWAISYLSDGANEKIQAIIDAGIPRRLVELLMHPSAQ 305
Query: 688 VCDQAVWALGNIIGDGPVLRDFVI 759
V A+ ++GNI+ V +I
Sbjct: 306 VQTPALRSVGNIVTGDDVQTQVII 329
Score = 34.7 bits (76), Expect = 0.015
Identities = 24/82 (29%), Positives = 37/82 (45%)
Frame = +1
Query: 517 LPILVQCLSRADNPALQFETAWALTNIASGTSAQTNKVVHAGAVPVFLQLLMSPHENVCD 696
LP L++ L D A TA ++ T+ KV+ AG VP F++ L + +
Sbjct: 80 LPDLLKALYSDDIEAQIQATAKFRKALSKETNPPIQKVIDAGVVPRFVEFLSHENNLLKF 139
Query: 697 QAVWALGNIIGDGPVLRDFVIE 762
+A WAL N+ V+E
Sbjct: 140 EASWALTNVASGSSNQTHVVVE 161
Score = 33.1 bits (72), Expect = 0.045
Identities = 18/75 (24%), Positives = 38/75 (50%)
Frame = +1
Query: 511 GILPILVQCLSRADNPALQFETAWALTNIASGTSAQTNKVVHAGAVPVFLQLLMSPHENV 690
G+L L+ + ++ + W L+N+ G + Q + + +PV +L+ + E+V
Sbjct: 205 GVLEPLLNIIESNRRLSMLRNSTWTLSNMCRGKNPQPDWNSISQVIPVLSKLIYTLDEDV 264
Query: 691 CDQAVWALGNIIGDG 735
A+WA+ + + DG
Sbjct: 265 LVDALWAI-SYLSDG 278
Score = 31.1 bits (67), Expect = 0.18
Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Frame = +1
Query: 517 LPILVQCLSRADNPALQFETAWALTNIASGTSAQTNKVVHAGAVPVFLQLLMSPHE-NVC 693
+P+ V LS ++ + + WAL NIA + + V+ G + L ++ S ++
Sbjct: 165 VPVFVSLLSSSEQDVRE-QAVWALGNIAGDSPMCRDHVLQCGVLEPLLNIIESNRRLSML 223
Query: 694 DQAVWALGNI 723
+ W L N+
Sbjct: 224 RNSTWTLSNM 233
>SPBC1604.08c |imp1||importin alpha|Schizosaccharomyces pombe|chr
2|||Manual
Length = 539
Score = 94.7 bits (225), Expect = 1e-20
Identities = 47/83 (56%), Positives = 60/83 (72%)
Frame = +1
Query: 511 GILPILVQCLSRADNPALQFETAWALTNIASGTSAQTNKVVHAGAVPVFLQLLMSPHENV 690
G++ VQ L +++ LQFE AWALTNIASGT+ QT VV +GAVP F+QLL SP ++V
Sbjct: 120 GVVDRFVQFLE-SEHHLLQFEAAWALTNIASGTTDQTRIVVDSGAVPRFIQLLSSPEKDV 178
Query: 691 CDQAVWALGNIIGDGPVLRDFVI 759
+Q VWALGNI GD RD+V+
Sbjct: 179 REQVVWALGNIAGDSSACRDYVL 201
Score = 55.6 bits (128), Expect = 7e-09
Identities = 42/118 (35%), Positives = 62/118 (52%), Gaps = 9/118 (7%)
Frame = +2
Query: 182 MATDQAKNRMHVFKNAGK-DVDEMRSEGMKSQSS*EKNKREETLQKRRNVPISYSTD--- 349
M + +R FK+ G DE+R + + Q K KREE+L KRRN+ D
Sbjct: 1 MESRYLSDRRSRFKSKGVFKADELRRQREEQQIEIRKQKREESLNKRRNLNAVLQNDIDV 60
Query: 350 EEEIDKNLATTDL---DELVMNAAN--AENPEAQLAAVQQCRKLLSCDKNPPIDELIA 508
EEE D++ + DE A+ +++ E QL AV + RK LS + +PPID++IA
Sbjct: 61 EEEADQSQVQMEQQMKDEFPKLTADVMSDDIELQLGAVTKFRKYLSKETHPPIDQVIA 118
Score = 45.6 bits (103), Expect = 8e-06
Identities = 25/71 (35%), Positives = 38/71 (53%)
Frame = +1
Query: 511 GILPILVQCLSRADNPALQFETAWALTNIASGTSAQTNKVVHAGAVPVFLQLLMSPHENV 690
G P LV+ LS + + +Q ++ NI +GT AQT ++ GA+ F LL EN+
Sbjct: 290 GCAPRLVELLS-SPSVNIQTPALRSVGNIVTGTDAQTQIIIDCGALNAFPSLLSHQKENI 348
Query: 691 CDQAVWALGNI 723
+A W + NI
Sbjct: 349 RKEACWTISNI 359
Score = 39.1 bits (87), Expect = 7e-04
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Frame = +1
Query: 508 SGILPILVQCL-SRADNPALQFETAWALTNIASGTSAQTNKVVHAGAVPVFLQLLMSPHE 684
+G+L L+ L S A + ++ W L+N+ G + N + AVP+ +LL S
Sbjct: 203 NGVLQPLLNILQSSASDVSMLRNATWTLSNLCRGKNPPPNWSTISVAVPILAKLLYSEDV 262
Query: 685 NVCDQAVWALGNIIGDGP 738
+ A WA+ + + DGP
Sbjct: 263 EIIVDACWAI-SYLSDGP 279
Score = 38.3 bits (85), Expect = 0.001
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Frame = +1
Query: 508 SGILPILVQCLSRADNPALQFETAWALTNIASGTSAQTNKVVHAGAVPVFLQLLMSPHEN 687
SG +P +Q LS + + + WAL NIA +SA + V+ G + L +L S +
Sbjct: 161 SGAVPRFIQLLSSPEKDVRE-QVVWALGNIAGDSSACRDYVLGNGVLQPLLNILQSSASD 219
Query: 688 V--CDQAVWALGNI 723
V A W L N+
Sbjct: 220 VSMLRNATWTLSNL 233
Score = 30.3 bits (65), Expect = 0.31
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +1
Query: 595 IASGTSAQTNKVVHAGAVPVFLQLLMSPHENVCDQAVWALGNI 723
++ T ++V+ G V F+Q L S H + +A WAL NI
Sbjct: 105 LSKETHPPIDQVIACGVVDRFVQFLESEHHLLQFEAAWALTNI 147
>SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 767
Score = 30.7 bits (66), Expect = 0.24
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = -1
Query: 706 ILPDHIRFHEVTSRAEGIQVLHRHGLLCLFVQTFRKLCLLK 584
I P+H+ + + R G+ + HR + FV +F K+ L K
Sbjct: 495 INPEHLNYFKFIGRVIGLAIFHRRFVDAFFVVSFYKMILQK 535
>SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 612
Score = 29.1 bits (62), Expect = 0.73
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Frame = +2
Query: 284 EKNKREETL--QKRRNVPISYSTDEEEIDKNLATTDLDEL-VMNAANAENPEAQLAA 445
E+ K E++L Q+RR + S E DKN++ DLDE +++ A N +A A
Sbjct: 62 ERAKLEQSLSFQQRRAEMLEKSLRELRKDKNISVKDLDEFHLLDKPAANNTKADAEA 118
>SPBP8B7.10c |||U3 snoRNP-associated protein Utp16
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 346
Score = 28.7 bits (61), Expect = 0.96
Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Frame = +2
Query: 137 CVITTYCVETASTDKMATDQAKNRMHVFKNAGKDVDEMRSEGMKSQSS-*EKNKREETLQ 313
C IT +E S +MA A ++ F N K D +++E +++S +N+ ++
Sbjct: 106 CCITYSKIENLSNTRMARLTAPSKGPSFSNLNKPNDLLKAEIEDNEASHYSQNQSSDSDS 165
Query: 314 KRRNVPISYSTDEEEIDKNLATTDLDEL 397
+S + +E+ K L +EL
Sbjct: 166 DEAPEEVSLKSSSDEVKKRLQRLKGNEL 193
>SPBC3E7.01 |fab1|ste12,
SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1932
Score = 28.3 bits (60), Expect = 1.3
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = -1
Query: 229 CILEHMHAVFRLISRHFICARCLDTVRGNYTKKQRINIKLLSSK 98
C+ E +FRL +C C + NY++ Q N L SK
Sbjct: 93 CLKEAPGFIFRLQGSIKVCRPCASILVNNYSRSQLFNHSLNESK 136
>SPBC409.05 |skp1|psh1, sph1|SCF ubiquitin ligase complex subunit
Skp1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 161
Score = 28.3 bits (60), Expect = 1.3
Identities = 16/59 (27%), Positives = 29/59 (49%)
Frame = +2
Query: 182 MATDQAKNRMHVFKNAGKDVDEMRSEGMKSQSS*EKNKREETLQKRRNVPISYSTDEEE 358
MA DQ V + D+ + G K+ ++ + K E ++K N+P ++ +EEE
Sbjct: 91 MAVDQEMLFEIVLASNYLDIKPLLDTGCKTVANMIRGKSPEDIRKTFNIPNDFTPEEEE 149
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 28.3 bits (60), Expect = 1.3
Identities = 17/52 (32%), Positives = 32/52 (61%)
Frame = -2
Query: 501 SSSIGGFLSHESSFLHCCTAANCASGFSALAAFITSSSRSVVARFLSISSSS 346
+SS F S ++ ++++ S FS++++ ++SS+ S + LSISSSS
Sbjct: 547 TSSSSDFSSSITTISSGISSSSIPSTFSSVSSILSSSTSSPSSTSLSISSSS 598
>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 786
Score = 27.5 bits (58), Expect = 2.2
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = -1
Query: 706 ILPDHIRFHEVTSRAEGIQVLHRHGLLCLFVQTFRKLCLLK 584
I P+H+ + R G+ + HR L FV + K L K
Sbjct: 514 INPEHLNYFRFIGRVIGLAIFHRRFLDAFFVVSLYKKLLRK 554
>SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 649
Score = 27.1 bits (57), Expect = 2.9
Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 9/82 (10%)
Frame = +2
Query: 164 TASTDKMATDQ--AKNRMHVFKN-AGKDVDEM----RSEGMKSQSS*EKNKREE--TLQK 316
TAS ++ D +NR +N +G V+E R ++ + S K + E T+QK
Sbjct: 261 TASLEEYLNDPDFEENRKQYLQNKSGSPVEETAILNRKPTLRKKKSIPKKQNESSSTIQK 320
Query: 317 RRNVPISYSTDEEEIDKNLATT 382
V S+ EEE K+L T
Sbjct: 321 ENTVQQEASSSEEEAVKSLPET 342
>SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 447
Score = 27.1 bits (57), Expect = 2.9
Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Frame = +3
Query: 123 ILCFFV*LPRT-VSRQRAQ-IKWRLIKRKTACM 215
IL F+ +PRT + + R + + WR+I R AC+
Sbjct: 400 ILASFLPIPRTKIHQMRVKHVHWRIINRVVACL 432
>SPAC1B1.03c |kap95||karyopherin Kap95|Schizosaccharomyces pombe|chr
1|||Manual
Length = 863
Score = 26.6 bits (56), Expect = 3.9
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +1
Query: 643 AVPVFLQLLMSPHENVCDQAVWALGNI 723
A+PV + +++ P V D WALG I
Sbjct: 409 ALPVLINMMVDPVIFVKDTTAWALGQI 435
>SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 642
Score = 26.6 bits (56), Expect = 3.9
Identities = 21/89 (23%), Positives = 40/89 (44%), Gaps = 2/89 (2%)
Frame = +2
Query: 170 STDKMATDQAKNRMHVFKNAGKDVDEMRSEGMKSQSS*EKNKREETLQ--KRRNVPISYS 343
ST+ D + N+ K VD + K+ +S ++ + Q K+++ ++ S
Sbjct: 9 STEVKKKDGSMNKRVKVAKLPKKVDSFSPKKKKNTTSSGSSESDSMSQNDKKKDSSLNES 68
Query: 344 TDEEEIDKNLATTDLDELVMNAANAENPE 430
DE+ + ++ DEL + AEN E
Sbjct: 69 EDEDFAGFGESASENDELESAESEAENDE 97
>SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 513
Score = 26.6 bits (56), Expect = 3.9
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -1
Query: 421 FCVGSVHHQLIKVGGSEVLVDLLLI 347
+C G H ++ +GGS V +DL+ I
Sbjct: 263 YCTGDGHKMVMSIGGSTVDLDLVQI 287
>SPAC1805.15c |pub2||ubiquitin-protein ligase
Pub2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 671
Score = 26.2 bits (55), Expect = 5.1
Identities = 14/40 (35%), Positives = 17/40 (42%)
Frame = -1
Query: 700 PDHIRFHEVTSRAEGIQVLHRHGLLCLFVQTFRKLCLLKP 581
PD + R G+ + HR L FV F K L KP
Sbjct: 401 PDFRSYFRFVGRVMGLAIYHRRYLDVQFVLPFYKRILQKP 440
>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2176
Score = 26.2 bits (55), Expect = 5.1
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = -1
Query: 679 EVTSRAEG--IQVLHRHGLLCLFVQTFRKLCLLKPKRSRTVTLDCQPSKGTE 530
E+TS + +Q L+RHGL+ + + + + LK K + + + Q G E
Sbjct: 1657 EITSSNDQNIVQYLYRHGLIKVLIASRDVIYSLKAKSNAVIVMGTQYYDGKE 1708
>SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 714
Score = 26.2 bits (55), Expect = 5.1
Identities = 18/104 (17%), Positives = 48/104 (46%)
Frame = +2
Query: 161 ETASTDKMATDQAKNRMHVFKNAGKDVDEMRSEGMKSQSS*EKNKREETLQKRRNVPISY 340
+TAS++K + + ++ + F N K S+ + S ++N+ + R + +S
Sbjct: 102 QTASSNKTFSKRKRSSENSFNNRNKAKSSETSDSSNTSQSFKENRALKDTATSRPLALSS 161
Query: 341 STDEEEIDKNLATTDLDELVMNAANAENPEAQLAAVQQCRKLLS 472
T ++ +K A ++ + + N++ ++ ++ K +S
Sbjct: 162 DTSYQKSEK--AKSEKSPFLSTSKNSDANYSKTTNQKEAEKAVS 203
>SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1018
Score = 25.8 bits (54), Expect = 6.8
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +1
Query: 634 HAGAVPVFLQLLMSPH-ENVCDQAVWALGNIIGDGPVL 744
H+ +P+ +LL + + +NV D +V AL II D P L
Sbjct: 806 HSEGIPLAFKLLDTLNLQNVGDSSVKALSIIIKDDPAL 843
>SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 362
Score = 25.4 bits (53), Expect = 9.0
Identities = 16/55 (29%), Positives = 27/55 (49%)
Frame = +2
Query: 338 YSTDEEEIDKNLATTDLDELVMNAANAENPEAQLAAVQQCRKLLSCDKNPPIDEL 502
+S+DEEE+D T+ +E N A E + +Q + + +K P DE+
Sbjct: 146 FSSDEEEMDDISVTSSEEEEEENGARIEELNSDEEDAEQAEEEI-LEKPVPKDEV 199
>SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 521
Score = 25.4 bits (53), Expect = 9.0
Identities = 13/43 (30%), Positives = 18/43 (41%)
Frame = -1
Query: 688 RFHEVTSRAEGIQVLHRHGLLCLFVQTFRKLCLLKPKRSRTVT 560
RF R G+ +LH CL V T + +K K R +
Sbjct: 80 RFEAEGFRTRGLLILHTFTFSCLIVLTNKDKSSIKDKSDRATS 122
>SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint component
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 809
Score = 25.4 bits (53), Expect = 9.0
Identities = 17/61 (27%), Positives = 30/61 (49%)
Frame = +2
Query: 248 MRSEGMKSQSS*EKNKREETLQKRRNVPISYSTDEEEIDKNLATTDLDELVMNAANAENP 427
+RS K S+ E + +K+ NV S S+ + + + DL EL+ + A +NP
Sbjct: 358 LRSNFSKYASTSINALLERSKEKKANVIESLSSAMDAVLATSSLDDLAELIASFAGNKNP 417
Query: 428 E 430
+
Sbjct: 418 Q 418
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,225,959
Number of Sequences: 5004
Number of extensions: 68242
Number of successful extensions: 290
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 244
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 284
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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