Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00067
(766 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41992-1|AAA83354.2| 514|Caenorhabditis elegans Importin alpha ... 128 3e-30
AF040995-1|AAB97171.1| 514|Caenorhabditis elegans importin alph... 128 3e-30
AF005266-1|AAQ13407.1| 423|Caenorhabditis elegans importin alph... 128 3e-30
U80444-4|AAB37790.1| 531|Caenorhabditis elegans Importin alpha ... 77 2e-14
AF326936-1|AAG49386.1| 531|Caenorhabditis elegans importin beta... 77 2e-14
AF040996-1|AAB97172.1| 531|Caenorhabditis elegans importin alph... 77 2e-14
AC024744-4|AAK72071.3| 1192|Caenorhabditis elegans Hypothetical ... 39 0.003
Z73908-4|CAA98127.2| 447|Caenorhabditis elegans Hypothetical pr... 37 0.018
Z74043-9|CAA98540.1| 524|Caenorhabditis elegans Hypothetical pr... 34 0.096
AL110479-24|CAJ76966.1| 1084|Caenorhabditis elegans Hypothetical... 34 0.096
AL110479-23|CAB60320.2| 1254|Caenorhabditis elegans Hypothetical... 34 0.096
AF040997-1|AAB97173.1| 524|Caenorhabditis elegans importin alph... 34 0.096
Z99710-12|CAI79158.1| 333|Caenorhabditis elegans Hypothetical p... 32 0.39
AL034393-28|CAI79175.1| 333|Caenorhabditis elegans Hypothetical... 32 0.39
AC025723-10|AAK29940.1| 691|Caenorhabditis elegans Mammalian fe... 32 0.51
AC025723-9|AAN84831.1| 640|Caenorhabditis elegans Mammalian fe6... 32 0.51
AF067608-11|AAC17656.2| 368|Caenorhabditis elegans Hypothetical... 31 0.68
Z77660-4|CAB01172.1| 501|Caenorhabditis elegans Hypothetical pr... 31 0.90
AF003134-6|AAB54146.3| 827|Caenorhabditis elegans Hypothetical ... 30 1.6
Z83120-3|CAB05587.1| 419|Caenorhabditis elegans Hypothetical pr... 29 2.7
Z83120-2|CAB05586.1| 883|Caenorhabditis elegans Hypothetical pr... 29 2.7
AC006621-3|AAK68263.1| 368|Caenorhabditis elegans Hypothetical ... 29 2.7
AL033509-1|CAA22059.1| 1494|Caenorhabditis elegans Hypothetical ... 29 4.8
Z81058-10|CAE17776.1| 136|Caenorhabditis elegans Hypothetical p... 28 6.3
AL032657-3|CAA21739.1| 1111|Caenorhabditis elegans Hypothetical ... 28 6.3
AF332568-1|AAG60061.1| 1111|Caenorhabditis elegans CED-1 protein. 28 6.3
AF003389-4|AAN63407.1| 598|Caenorhabditis elegans Hypothetical ... 28 6.3
AF003389-3|AAC71136.1| 1003|Caenorhabditis elegans Hypothetical ... 28 6.3
AC024824-1|AAK85503.1| 679|Caenorhabditis elegans Hypothetical ... 28 6.3
L23645-8|AAK26133.1| 282|Caenorhabditis elegans Peroxisome asse... 28 8.4
>U41992-1|AAA83354.2| 514|Caenorhabditis elegans Importin alpha
family protein 3 protein.
Length = 514
Score = 128 bits (310), Expect = 3e-30
Identities = 62/85 (72%), Positives = 70/85 (82%)
Frame = +1
Query: 508 SGILPILVQCLSRADNPALQFETAWALTNIASGTSAQTNKVVHAGAVPVFLQLLMSPHEN 687
SGILP+LVQCLS D P LQFE AWALTNIASGTS QT VV+AGAVP+FLQLL + N
Sbjct: 107 SGILPVLVQCLSSTD-PNLQFEAAWALTNIASGTSEQTQAVVNAGAVPLFLQLLSCGNLN 165
Query: 688 VCDQAVWALGNIIGDGPVLRDFVIE 762
VC+Q+VWALGNIIGDGP RD+ +E
Sbjct: 166 VCEQSVWALGNIIGDGPHFRDYCLE 190
Score = 68.5 bits (160), Expect = 5e-12
Identities = 43/107 (40%), Positives = 58/107 (54%), Gaps = 4/107 (3%)
Frame = +2
Query: 197 AKNRMHVFKNAGKDV--DEMRSEGMKSQSS*EKNKREETLQKRRNVPISYSTDEEEIDKN 370
+ NR +KN K+ E R+E + S K+KREE + KRRN+ D E
Sbjct: 2 SSNRQAYYKNNAKEQIGKEKRNEEVVSI---RKDKREEAISKRRNINTQIEDDSETSTTP 58
Query: 371 LATTDLD--ELVMNAANAENPEAQLAAVQQCRKLLSCDKNPPIDELI 505
D + L + AA + +P QL AVQQ RK+LS D+NPPID+LI
Sbjct: 59 PGPFDANLLRLTVAAAQSSDPAEQLTAVQQARKMLSTDRNPPIDDLI 105
Score = 33.5 bits (73), Expect = 0.17
Identities = 22/66 (33%), Positives = 31/66 (46%)
Frame = +1
Query: 526 LVQCLSRADNPALQFETAWALTNIASGTSAQTNKVVHAGAVPVFLQLLMSPHENVCDQAV 705
LV L D +Q A+ NI +GT QT V+ +G + LL E + +AV
Sbjct: 282 LVPLLGHVD-VKVQTAALRAVGNIVTGTDEQTQLVLDSGVLRFMPGLLAHYKEKINKEAV 340
Query: 706 WALGNI 723
W + NI
Sbjct: 341 WFVSNI 346
Score = 30.7 bits (66), Expect = 1.2
Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Frame = +1
Query: 526 LVQCLSRADNPALQFETAW-ALTNIASGTSAQTNKVVHAGAVPVFLQLLMSPHENVCDQA 702
L +++ +PA Q A +++ + + ++ +G +PV +Q L S N+ +A
Sbjct: 69 LTVAAAQSSDPAEQLTAVQQARKMLSTDRNPPIDDLIGSGILPVLVQCLSSTDPNLQFEA 128
Query: 703 VWALGNI 723
WAL NI
Sbjct: 129 AWALTNI 135
>AF040995-1|AAB97171.1| 514|Caenorhabditis elegans importin alpha 3
protein.
Length = 514
Score = 128 bits (310), Expect = 3e-30
Identities = 62/85 (72%), Positives = 70/85 (82%)
Frame = +1
Query: 508 SGILPILVQCLSRADNPALQFETAWALTNIASGTSAQTNKVVHAGAVPVFLQLLMSPHEN 687
SGILP+LVQCLS D P LQFE AWALTNIASGTS QT VV+AGAVP+FLQLL + N
Sbjct: 107 SGILPVLVQCLSSTD-PNLQFEAAWALTNIASGTSEQTQAVVNAGAVPLFLQLLSCGNLN 165
Query: 688 VCDQAVWALGNIIGDGPVLRDFVIE 762
VC+Q+VWALGNIIGDGP RD+ +E
Sbjct: 166 VCEQSVWALGNIIGDGPHFRDYCLE 190
Score = 68.5 bits (160), Expect = 5e-12
Identities = 43/107 (40%), Positives = 58/107 (54%), Gaps = 4/107 (3%)
Frame = +2
Query: 197 AKNRMHVFKNAGKDV--DEMRSEGMKSQSS*EKNKREETLQKRRNVPISYSTDEEEIDKN 370
+ NR +KN K+ E R+E + S K+KREE + KRRN+ D E
Sbjct: 2 SSNRQAYYKNNAKEQIGKEKRNEEVVSI---RKDKREEAISKRRNINTQIEDDSETSTTP 58
Query: 371 LATTDLD--ELVMNAANAENPEAQLAAVQQCRKLLSCDKNPPIDELI 505
D + L + AA + +P QL AVQQ RK+LS D+NPPID+LI
Sbjct: 59 PGPFDANLLRLTVAAAQSSDPAEQLTAVQQARKMLSTDRNPPIDDLI 105
Score = 33.5 bits (73), Expect = 0.17
Identities = 22/66 (33%), Positives = 31/66 (46%)
Frame = +1
Query: 526 LVQCLSRADNPALQFETAWALTNIASGTSAQTNKVVHAGAVPVFLQLLMSPHENVCDQAV 705
LV L D +Q A+ NI +GT QT V+ +G + LL E + +AV
Sbjct: 282 LVPLLGHVD-VKVQTAALRAVGNIVTGTDEQTQLVLDSGVLRFMPGLLAHYKEKINKEAV 340
Query: 706 WALGNI 723
W + NI
Sbjct: 341 WFVSNI 346
Score = 30.7 bits (66), Expect = 1.2
Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Frame = +1
Query: 526 LVQCLSRADNPALQFETAW-ALTNIASGTSAQTNKVVHAGAVPVFLQLLMSPHENVCDQA 702
L +++ +PA Q A +++ + + ++ +G +PV +Q L S N+ +A
Sbjct: 69 LTVAAAQSSDPAEQLTAVQQARKMLSTDRNPPIDDLIGSGILPVLVQCLSSTDPNLQFEA 128
Query: 703 VWALGNI 723
WAL NI
Sbjct: 129 AWALTNI 135
>AF005266-1|AAQ13407.1| 423|Caenorhabditis elegans importin alpha-3
subunit protein.
Length = 423
Score = 128 bits (310), Expect = 3e-30
Identities = 62/85 (72%), Positives = 70/85 (82%)
Frame = +1
Query: 508 SGILPILVQCLSRADNPALQFETAWALTNIASGTSAQTNKVVHAGAVPVFLQLLMSPHEN 687
SGILP+LVQCLS D P LQFE AWALTNIASGTS QT VV+AGAVP+FLQLL + N
Sbjct: 16 SGILPVLVQCLSSTD-PNLQFEAAWALTNIASGTSEQTQAVVNAGAVPLFLQLLSCGNLN 74
Query: 688 VCDQAVWALGNIIGDGPVLRDFVIE 762
VC+Q+VWALGNIIGDGP RD+ +E
Sbjct: 75 VCEQSVWALGNIIGDGPHFRDYCLE 99
Score = 33.5 bits (73), Expect = 0.17
Identities = 22/66 (33%), Positives = 31/66 (46%)
Frame = +1
Query: 526 LVQCLSRADNPALQFETAWALTNIASGTSAQTNKVVHAGAVPVFLQLLMSPHENVCDQAV 705
LV L D +Q A+ NI +GT QT V+ +G + LL E + +AV
Sbjct: 191 LVPLLGHVD-VKVQTAALRAVGNIVTGTDEQTQLVLDSGVLRFMPGLLAHYKEKINKEAV 249
Query: 706 WALGNI 723
W + NI
Sbjct: 250 WFVSNI 255
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +1
Query: 628 VVHAGAVPVFLQLLMSPHENVCDQAVWALGNI 723
++ +G +PV +Q L S N+ +A WAL NI
Sbjct: 13 LIGSGILPVLVQCLSSTDPNLQFEAAWALTNI 44
>U80444-4|AAB37790.1| 531|Caenorhabditis elegans Importin alpha
family protein 2 protein.
Length = 531
Score = 76.6 bits (180), Expect = 2e-14
Identities = 38/84 (45%), Positives = 52/84 (61%)
Frame = +1
Query: 511 GILPILVQCLSRADNPALQFETAWALTNIASGTSAQTNKVVHAGAVPVFLQLLMSPHENV 690
G+L LVQ LS +N +Q+E AWALTNI SG++ QT V AG + L + +
Sbjct: 132 GLLQALVQALS-VENERVQYEAAWALTNIVSGSTEQTIAAVEAGVTIPLIHLSVHQSAQI 190
Query: 691 CDQAVWALGNIIGDGPVLRDFVIE 762
+QA+WA+ NI GD LRD+VI+
Sbjct: 191 SEQALWAVANIAGDSSQLRDYVIK 214
Score = 42.7 bits (96), Expect = 3e-04
Identities = 21/75 (28%), Positives = 37/75 (49%)
Frame = +1
Query: 511 GILPILVQCLSRADNPALQFETAWALTNIASGTSAQTNKVVHAGAVPVFLQLLMSPHENV 690
G L ++ + + + ++ E W ++NI +GT Q V+ A +PV + +L S
Sbjct: 344 GSLDEILPLMEKTRSSSIVKECCWLVSNIIAGTQKQIQAVLDANLLPVLINVLKSGDHKC 403
Query: 691 CDQAVWALGNIIGDG 735
+A WAL N+ G
Sbjct: 404 QFEASWALSNLAQGG 418
Score = 39.1 bits (87), Expect = 0.003
Identities = 32/110 (29%), Positives = 50/110 (45%), Gaps = 10/110 (9%)
Frame = +2
Query: 206 RMHVFKNAGKDVDEMRSEGMKSQSS*EKNKREETLQKRRNV--------PISYSTDEEEI 361
R+ +KN K +E+R + K K + + KRRN+ S + E+I
Sbjct: 21 RLQQYKNLTKH-EELRRRRTECSVEIRKQKGADMMMKRRNIVDVDEGGNSESELEEPEKI 79
Query: 362 DKNLATTDLDELVMNAANAENP--EAQLAAVQQCRKLLSCDKNPPIDELI 505
++T L + A + NP + + + RK LS KNPPIDE+I
Sbjct: 80 SHQQSSTRLSNDEIRAILSNNPSEDDMVRCFESLRKSLSKTKNPPIDEVI 129
Score = 31.1 bits (67), Expect = 0.90
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +1
Query: 622 NKVVHAGAVPVFLQLLMSPHENVCDQAVWALGNII 726
++V+H G + +Q L +E V +A WAL NI+
Sbjct: 126 DEVIHCGLLQALVQALSVENERVQYEAAWALTNIV 160
>AF326936-1|AAG49386.1| 531|Caenorhabditis elegans importin beta
binding domain proteinprotein.
Length = 531
Score = 76.6 bits (180), Expect = 2e-14
Identities = 38/84 (45%), Positives = 52/84 (61%)
Frame = +1
Query: 511 GILPILVQCLSRADNPALQFETAWALTNIASGTSAQTNKVVHAGAVPVFLQLLMSPHENV 690
G+L LVQ LS +N +Q+E AWALTNI SG++ QT V AG + L + +
Sbjct: 132 GLLQALVQALS-VENERVQYEAAWALTNIVSGSTEQTIAAVEAGVTIPLIHLSVHQSAQI 190
Query: 691 CDQAVWALGNIIGDGPVLRDFVIE 762
+QA+WA+ NI GD LRD+VI+
Sbjct: 191 SEQALWAVANIAGDSSQLRDYVIK 214
Score = 42.7 bits (96), Expect = 3e-04
Identities = 21/75 (28%), Positives = 37/75 (49%)
Frame = +1
Query: 511 GILPILVQCLSRADNPALQFETAWALTNIASGTSAQTNKVVHAGAVPVFLQLLMSPHENV 690
G L ++ + + + ++ E W ++NI +GT Q V+ A +PV + +L S
Sbjct: 344 GSLDEILPLMEKTRSSSIVKECCWLVSNIIAGTQKQIQAVLDANLLPVLINVLKSGDHKC 403
Query: 691 CDQAVWALGNIIGDG 735
+A WAL N+ G
Sbjct: 404 QFEASWALSNLAQGG 418
Score = 39.1 bits (87), Expect = 0.003
Identities = 32/110 (29%), Positives = 50/110 (45%), Gaps = 10/110 (9%)
Frame = +2
Query: 206 RMHVFKNAGKDVDEMRSEGMKSQSS*EKNKREETLQKRRNV--------PISYSTDEEEI 361
R+ +KN K +E+R + K K + + KRRN+ S + E+I
Sbjct: 21 RLQQYKNLTKH-EELRRRRTECSVEIRKQKGADMMMKRRNIVDVDEGGNSESELEEPEKI 79
Query: 362 DKNLATTDLDELVMNAANAENP--EAQLAAVQQCRKLLSCDKNPPIDELI 505
++T L + A + NP + + + RK LS KNPPIDE+I
Sbjct: 80 SHQQSSTRLSNDEIRAILSNNPSEDDMVRCFESLRKSLSKTKNPPIDEVI 129
Score = 31.1 bits (67), Expect = 0.90
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +1
Query: 622 NKVVHAGAVPVFLQLLMSPHENVCDQAVWALGNII 726
++V+H G + +Q L +E V +A WAL NI+
Sbjct: 126 DEVIHCGLLQALVQALSVENERVQYEAAWALTNIV 160
>AF040996-1|AAB97172.1| 531|Caenorhabditis elegans importin alpha 2
protein.
Length = 531
Score = 76.6 bits (180), Expect = 2e-14
Identities = 38/84 (45%), Positives = 52/84 (61%)
Frame = +1
Query: 511 GILPILVQCLSRADNPALQFETAWALTNIASGTSAQTNKVVHAGAVPVFLQLLMSPHENV 690
G+L LVQ LS +N +Q+E AWALTNI SG++ QT V AG + L + +
Sbjct: 132 GLLQALVQALS-VENERVQYEAAWALTNIVSGSTEQTIAAVEAGVTIPLIHLSVHQSAQI 190
Query: 691 CDQAVWALGNIIGDGPVLRDFVIE 762
+QA+WA+ NI GD LRD+VI+
Sbjct: 191 SEQALWAVANIAGDSSQLRDYVIK 214
Score = 42.7 bits (96), Expect = 3e-04
Identities = 21/75 (28%), Positives = 37/75 (49%)
Frame = +1
Query: 511 GILPILVQCLSRADNPALQFETAWALTNIASGTSAQTNKVVHAGAVPVFLQLLMSPHENV 690
G L ++ + + + ++ E W ++NI +GT Q V+ A +PV + +L S
Sbjct: 344 GSLDEILPLMEKTRSSSIVKECCWLVSNIIAGTQKQIQAVLDANLLPVLINVLKSGDHKC 403
Query: 691 CDQAVWALGNIIGDG 735
+A WAL N+ G
Sbjct: 404 QFEASWALSNLAQGG 418
Score = 39.1 bits (87), Expect = 0.003
Identities = 32/110 (29%), Positives = 50/110 (45%), Gaps = 10/110 (9%)
Frame = +2
Query: 206 RMHVFKNAGKDVDEMRSEGMKSQSS*EKNKREETLQKRRNV--------PISYSTDEEEI 361
R+ +KN K +E+R + K K + + KRRN+ S + E+I
Sbjct: 21 RLQQYKNLTKH-EELRRRRTECSVEIRKQKGADMMMKRRNIVDVDEGGNSESELEEPEKI 79
Query: 362 DKNLATTDLDELVMNAANAENP--EAQLAAVQQCRKLLSCDKNPPIDELI 505
++T L + A + NP + + + RK LS KNPPIDE+I
Sbjct: 80 SHQQSSTRLSNDEIRAILSNNPSEDDMVRCFESLRKSLSKTKNPPIDEVI 129
Score = 31.1 bits (67), Expect = 0.90
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +1
Query: 622 NKVVHAGAVPVFLQLLMSPHENVCDQAVWALGNII 726
++V+H G + +Q L +E V +A WAL NI+
Sbjct: 126 DEVIHCGLLQALVQALSVENERVQYEAAWALTNIV 160
>AC024744-4|AAK72071.3| 1192|Caenorhabditis elegans Hypothetical
protein Y108G3AL.7 protein.
Length = 1192
Score = 39.1 bits (87), Expect = 0.003
Identities = 21/62 (33%), Positives = 39/62 (62%)
Frame = +2
Query: 233 KDVDEMRSEGMKSQSS*EKNKREETLQKRRNVPISYSTDEEEIDKNLATTDLDELVMNAA 412
K +++ +SE + SS E+ +R + +KR++ S T +EE ++LATTD + V+N A
Sbjct: 243 KAIEDTQSEESSADSS-EERERARSRRKRKDEASSAVTSDEEDQEDLATTDSENPVINGA 301
Query: 413 NA 418
++
Sbjct: 302 SS 303
>Z73908-4|CAA98127.2| 447|Caenorhabditis elegans Hypothetical
protein F53B2.5 protein.
Length = 447
Score = 36.7 bits (81), Expect = 0.018
Identities = 14/56 (25%), Positives = 29/56 (51%)
Frame = +1
Query: 565 QFETAWALTNIASGTSAQTNKVVHAGAVPVFLQLLMSPHENVCDQAVWALGNIIGD 732
+ W +TN+ + T+ V++ + + ++L+ S + + Q VWA+ NI D
Sbjct: 58 EVNAVWIITNMCCISQEVTHLFVNSNCLDILIKLVRSQNARLSSQTVWAIANIAAD 113
Score = 33.9 bits (74), Expect = 0.13
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Frame = +1
Query: 505 SSGILPILVQCLSRADNPALQFETAWALTNIASGTSAQTNKVVHAGAVPVFLQLLMSPHE 684
+S L IL++ L R+ N L +T WA+ NIA+ S+ K + + + L + ++
Sbjct: 81 NSNCLDILIK-LVRSQNARLSSQTVWAIANIAADCSSCKLKCRSPKLLKILARNLQTSYK 139
Query: 685 -NVCD--QAVWALGNIIGDG 735
+ D Q +W + NI G
Sbjct: 140 LDDADRRQLIWCVNNIFSGG 159
Score = 31.9 bits (69), Expect = 0.51
Identities = 16/57 (28%), Positives = 29/57 (50%)
Frame = +1
Query: 592 NIASGTSAQTNKVVHAGAVPVFLQLLMSPHENVCDQAVWALGNIIGDGPVLRDFVIE 762
NIA G QT+ +V V + + MS E+ +A W + N++ P D++++
Sbjct: 246 NIAVGNDVQTDLLVDNPKFRVVMNIAMSSPEHH-SEAAWIISNVVAGAPRHVDYIMD 301
>Z74043-9|CAA98540.1| 524|Caenorhabditis elegans Hypothetical
protein T19B10.7 protein.
Length = 524
Score = 34.3 bits (75), Expect = 0.096
Identities = 15/58 (25%), Positives = 31/58 (53%)
Frame = +2
Query: 200 KNRMHVFKNAGKDVDEMRSEGMKSQSS*EKNKREETLQKRRNVPISYSTDEEEIDKNL 373
+ R ++K+ +D +EMR + + + KN+R+E ++ R + + S EE + L
Sbjct: 10 EERSKMYKSNVRDQNEMRRKRREDEVQIRKNRRDEKFERNRQITVQRSLSHEETSELL 67
>AL110479-24|CAJ76966.1| 1084|Caenorhabditis elegans Hypothetical
protein Y105C5B.21b protein.
Length = 1084
Score = 34.3 bits (75), Expect = 0.096
Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
Frame = +1
Query: 511 GILPILVQCLSRADNPALQFETAWALTNIASGTSAQTNK--VVHAGAVPVFLQLLMSPHE 684
G +P L+ L R+D P +Q L N++ G NK V+ A V + ++L + H+
Sbjct: 563 GGIPKLIALL-RSDTPRIQKNACACLKNLSFGKENDANKLAVMEADGVRLIAEVLRTTHD 621
Query: 685 -NVCDQAVWALGNIIGDGPVLRDFVIE 762
+V ++A AL N + +L+ ++E
Sbjct: 622 ASVKEEAAAALWN-LSSADMLKPVILE 647
>AL110479-23|CAB60320.2| 1254|Caenorhabditis elegans Hypothetical
protein Y105C5B.21a protein.
Length = 1254
Score = 34.3 bits (75), Expect = 0.096
Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
Frame = +1
Query: 511 GILPILVQCLSRADNPALQFETAWALTNIASGTSAQTNK--VVHAGAVPVFLQLLMSPHE 684
G +P L+ L R+D P +Q L N++ G NK V+ A V + ++L + H+
Sbjct: 733 GGIPKLIALL-RSDTPRIQKNACACLKNLSFGKENDANKLAVMEADGVRLIAEVLRTTHD 791
Query: 685 -NVCDQAVWALGNIIGDGPVLRDFVIE 762
+V ++A AL N + +L+ ++E
Sbjct: 792 ASVKEEAAAALWN-LSSADMLKPVILE 817
>AF040997-1|AAB97173.1| 524|Caenorhabditis elegans importin alpha 1
protein.
Length = 524
Score = 34.3 bits (75), Expect = 0.096
Identities = 15/58 (25%), Positives = 31/58 (53%)
Frame = +2
Query: 200 KNRMHVFKNAGKDVDEMRSEGMKSQSS*EKNKREETLQKRRNVPISYSTDEEEIDKNL 373
+ R ++K+ +D +EMR + + + KN+R+E ++ R + + S EE + L
Sbjct: 10 EERSKMYKSNVRDQNEMRRKRREDEVQIRKNRRDEKFERNRQITVQRSLSHEETSELL 67
>Z99710-12|CAI79158.1| 333|Caenorhabditis elegans Hypothetical
protein Y18D10A.22 protein.
Length = 333
Score = 32.3 bits (70), Expect = 0.39
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = -1
Query: 589 LKPKRSRTVTLDCQPSKGTELGWGVFQSYELINRRVFITREQFSALLH 446
LKPK SRT+ + +K +E+ W + +S +L V + F L+H
Sbjct: 24 LKPKHSRTIIVGTHKAKSSEMFWNLLESIQLEKHPVMTWK--FCNLVH 69
>AL034393-28|CAI79175.1| 333|Caenorhabditis elegans Hypothetical
protein Y18D10A.22 protein.
Length = 333
Score = 32.3 bits (70), Expect = 0.39
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = -1
Query: 589 LKPKRSRTVTLDCQPSKGTELGWGVFQSYELINRRVFITREQFSALLH 446
LKPK SRT+ + +K +E+ W + +S +L V + F L+H
Sbjct: 24 LKPKHSRTIIVGTHKAKSSEMFWNLLESIQLEKHPVMTWK--FCNLVH 69
>AC025723-10|AAK29940.1| 691|Caenorhabditis elegans Mammalian fe65
homolog protein1, isoform a protein.
Length = 691
Score = 31.9 bits (69), Expect = 0.51
Identities = 22/74 (29%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Frame = +2
Query: 170 STDKMATDQAKNRMHVFKNAGKDVDEMR--SEGMKSQSS*EKNKREETLQKRRNVPISYS 343
S K A ++ ++R +V +N K + S G S +K +REE ++RRN+ + YS
Sbjct: 90 SAFKEAYEEEESREYVIENGVKRLVNQHYDSRGYSSAGRGQKGRREE--ERRRNMAVDYS 147
Query: 344 TDEEEIDKNLATTD 385
+ ++ ++LA D
Sbjct: 148 S--QDFRQSLAAID 159
>AC025723-9|AAN84831.1| 640|Caenorhabditis elegans Mammalian fe65
homolog protein1, isoform b protein.
Length = 640
Score = 31.9 bits (69), Expect = 0.51
Identities = 22/74 (29%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Frame = +2
Query: 170 STDKMATDQAKNRMHVFKNAGKDVDEMR--SEGMKSQSS*EKNKREETLQKRRNVPISYS 343
S K A ++ ++R +V +N K + S G S +K +REE ++RRN+ + YS
Sbjct: 60 SAFKEAYEEEESREYVIENGVKRLVNQHYDSRGYSSAGRGQKGRREE--ERRRNMAVDYS 117
Query: 344 TDEEEIDKNLATTD 385
+ ++ ++LA D
Sbjct: 118 S--QDFRQSLAAID 129
>AF067608-11|AAC17656.2| 368|Caenorhabditis elegans Hypothetical
protein B0511.11 protein.
Length = 368
Score = 31.5 bits (68), Expect = 0.68
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Frame = +2
Query: 272 QSS*EKNKREETLQKRRNVPIS--YSTDEEEIDKNLATTDLDE 394
Q++ + K+E+ KR NVP++ YS + KN +TT L E
Sbjct: 91 QNNSDAAKKEDDKSKRENVPLTVVYSNPSISVSKNFSTTPLAE 133
>Z77660-4|CAB01172.1| 501|Caenorhabditis elegans Hypothetical
protein F38H4.4 protein.
Length = 501
Score = 31.1 bits (67), Expect = 0.90
Identities = 19/84 (22%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Frame = +2
Query: 161 ETASTDKMATDQAKNRMHVFKNAGKDV-DEM---RSEGMKSQSS*EKNKREETLQKRRNV 328
ET DK+ ++K ++ + KD+ DE + EG K + EK + ++++
Sbjct: 127 ETDKDDKLQKSKSKTKLDEKSDNNKDIKDEKKDDKKEGKKEEKKDEKKDDDGNTEEKKQK 186
Query: 329 PISYSTDEEEIDKNLATTDLDELV 400
+ + + D N+A D +++V
Sbjct: 187 WLGLAKRFVDEDANIAANDFEQVV 210
>AF003134-6|AAB54146.3| 827|Caenorhabditis elegans Hypothetical
protein ZC581.9 protein.
Length = 827
Score = 30.3 bits (65), Expect = 1.6
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = -1
Query: 232 ACILEHMHAVFRLISRHFICARCLDTV 152
A ILE+M A+FR +S F+ +CLD +
Sbjct: 447 AFILENMSALFRRLSDEFVEDKCLDVI 473
>Z83120-3|CAB05587.1| 419|Caenorhabditis elegans Hypothetical
protein R06A4.4b protein.
Length = 419
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Frame = +1
Query: 655 FLQLLMSPHE-NVCDQAVWALGNI-IGDGPVLRDFV 756
FL + P + +VC+ A+WALG + + GP ++ F+
Sbjct: 240 FLAQNLDPSKISVCNNAIWALGELALKMGPAMKQFI 275
>Z83120-2|CAB05586.1| 883|Caenorhabditis elegans Hypothetical
protein R06A4.4a protein.
Length = 883
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Frame = +1
Query: 655 FLQLLMSPHE-NVCDQAVWALGNI-IGDGPVLRDFV 756
FL + P + +VC+ A+WALG + + GP ++ F+
Sbjct: 704 FLAQNLDPSKISVCNNAIWALGELALKMGPAMKQFI 739
>AC006621-3|AAK68263.1| 368|Caenorhabditis elegans Hypothetical
protein C52A10.3 protein.
Length = 368
Score = 29.5 bits (63), Expect = 2.7
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -1
Query: 523 WGVFQSYELINRRVFITREQFSALLHS 443
W YEL+ R +F+T EQ S +L+S
Sbjct: 193 WLTKCKYELVGREIFLTSEQLSKVLNS 219
>AL033509-1|CAA22059.1| 1494|Caenorhabditis elegans Hypothetical
protein Y113G7C.1 protein.
Length = 1494
Score = 28.7 bits (61), Expect = 4.8
Identities = 19/69 (27%), Positives = 35/69 (50%)
Frame = +2
Query: 161 ETASTDKMATDQAKNRMHVFKNAGKDVDEMRSEGMKSQSS*EKNKREETLQKRRNVPISY 340
+ A ++ D+ + +M+V + A KD E R++ K + + K EE +K +
Sbjct: 1033 QDADIERAEADEQRRKMNV-ERAKKD--EERAKKDKRDAEERRKKDEERAKKDKEDAKKA 1089
Query: 341 STDEEEIDK 367
D+E+IDK
Sbjct: 1090 KEDQEKIDK 1098
>Z81058-10|CAE17776.1| 136|Caenorhabditis elegans Hypothetical
protein F11E6.10 protein.
Length = 136
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -3
Query: 317 VSEVFPLFCFFLNSTVTSFLRCAFHRHLCLHS 222
+S + P+FCFFL + F+ + R LC S
Sbjct: 34 ISVIIPVFCFFLMFGIVIFMMYVY-RRLCTRS 64
>AL032657-3|CAA21739.1| 1111|Caenorhabditis elegans Hypothetical
protein Y47H9C.4a protein.
Length = 1111
Score = 28.3 bits (60), Expect = 6.3
Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Frame = +2
Query: 239 VDEMRSEGMKSQSS*EKNKREETLQKRRNVPISYSTDEEEIDK-NLATTDLDELVMNAAN 415
+DE+ EG S +S ++R ++ P+ DEEE D+ + + V + +
Sbjct: 1022 LDEVAGEGSSSSASASASRRGLNSSEQSRRPLLEEHDEEEFDEPHENSISPAHAVTTSNH 1081
Query: 416 AENPEAQLAA 445
ENP A +++
Sbjct: 1082 NENPYADISS 1091
>AF332568-1|AAG60061.1| 1111|Caenorhabditis elegans CED-1 protein.
Length = 1111
Score = 28.3 bits (60), Expect = 6.3
Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Frame = +2
Query: 239 VDEMRSEGMKSQSS*EKNKREETLQKRRNVPISYSTDEEEIDK-NLATTDLDELVMNAAN 415
+DE+ EG S +S ++R ++ P+ DEEE D+ + + V + +
Sbjct: 1022 LDEVAGEGSSSSASASASRRGLNSSEQSRRPLLEEHDEEEFDEPHENSISPAHAVTTSNH 1081
Query: 416 AENPEAQLAA 445
ENP A +++
Sbjct: 1082 NENPYADISS 1091
>AF003389-4|AAN63407.1| 598|Caenorhabditis elegans Hypothetical
protein F23H11.4b protein.
Length = 598
Score = 28.3 bits (60), Expect = 6.3
Identities = 25/96 (26%), Positives = 46/96 (47%), Gaps = 4/96 (4%)
Frame = +2
Query: 215 VFKNAGK---DVDEMRSEGMKSQSS*EKNKREETLQKRRNVPISYSTDEEEIDKNLATTD 385
VF++ GK D + G S +S +K KR + RN+ +S+ DE+ + + T D
Sbjct: 321 VFRDEGKMKIDGSSITFVGFVSLTSSKKEKRLHC--RLRNMQLSFHDDEDSTEPSNGTFD 378
Query: 386 LDELVMNAANAENPEAQLAAVQQCRKLLS-CDKNPP 490
+ + + A + L V + R ++S ++PP
Sbjct: 379 IKGIYLFRHMASDTPYILIHVGEKRNVISFIPEDPP 414
>AF003389-3|AAC71136.1| 1003|Caenorhabditis elegans Hypothetical
protein F23H11.4a protein.
Length = 1003
Score = 28.3 bits (60), Expect = 6.3
Identities = 25/96 (26%), Positives = 46/96 (47%), Gaps = 4/96 (4%)
Frame = +2
Query: 215 VFKNAGK---DVDEMRSEGMKSQSS*EKNKREETLQKRRNVPISYSTDEEEIDKNLATTD 385
VF++ GK D + G S +S +K KR + RN+ +S+ DE+ + + T D
Sbjct: 321 VFRDEGKMKIDGSSITFVGFVSLTSSKKEKRLHC--RLRNMQLSFHDDEDSTEPSNGTFD 378
Query: 386 LDELVMNAANAENPEAQLAAVQQCRKLLS-CDKNPP 490
+ + + A + L V + R ++S ++PP
Sbjct: 379 IKGIYLFRHMASDTPYILIHVGEKRNVISFIPEDPP 414
>AC024824-1|AAK85503.1| 679|Caenorhabditis elegans Hypothetical
protein Y55B1BR.3 protein.
Length = 679
Score = 28.3 bits (60), Expect = 6.3
Identities = 24/97 (24%), Positives = 49/97 (50%), Gaps = 1/97 (1%)
Frame = +2
Query: 176 DKMATDQAKNRMHVFKNAGKDVDEMRSEGMKSQSS*EKNKREETLQKR-RNVPISYSTDE 352
DK + K + ++ D EM KS+ S +K+K+ + +KR R V S S DE
Sbjct: 230 DKKKWKKNKAKRSKRDDSSDDDSEMERRRKKSKKS-KKSKKFKKSEKRKRAVNDSSSDDE 288
Query: 353 EEIDKNLATTDLDELVMNAANAENPEAQLAAVQQCRK 463
+E +K + + + +++E+ E + ++ ++ +K
Sbjct: 289 DEEEKPEKRSKKSKKAVIDSSSEDEEEEKSSKKRSKK 325
>L23645-8|AAK26133.1| 282|Caenorhabditis elegans Peroxisome
assembly factor protein19 protein.
Length = 282
Score = 27.9 bits (59), Expect = 8.4
Identities = 21/80 (26%), Positives = 31/80 (38%)
Frame = +2
Query: 221 KNAGKDVDEMRSEGMKSQSS*EKNKREETLQKRRNVPISYSTDEEEIDKNLATTDLDELV 400
+ A KD +M + + Q K + + P+ D E + A L E
Sbjct: 56 QKAAKDFQKMLEQMVTLQEEAMKKAGADPSEGEGEQPLD-PNDPEALAMMDALKQLMECS 114
Query: 401 MNAANAENPEAQLAAVQQCR 460
N ANA NPE +A + R
Sbjct: 115 SNVANASNPEEFMAGLDMLR 134
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,098,285
Number of Sequences: 27780
Number of extensions: 391269
Number of successful extensions: 1358
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 1236
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1349
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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