Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00066
(747 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p... 146 4e-36
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ... 142 4e-35
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M... 130 2e-31
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc... 130 2e-31
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 122 5e-29
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch... 64 3e-11
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom... 42 1e-04
SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces pombe... 30 0.40
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 29 0.70
SPAC25B8.04c |||mitochondrial splicing suppressor |Schizosacchar... 29 0.93
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 28 1.6
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo... 27 3.8
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar... 25 8.7
SPAC823.11 |||sphingosine-1-phosphate phosphatase |Schizosacchar... 25 8.7
SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co... 25 8.7
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |... 25 8.7
>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 647
Score = 146 bits (353), Expect = 4e-36
Identities = 69/79 (87%), Positives = 74/79 (93%)
Frame = +2
Query: 509 NDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGERNVLIFDLGGGTFDVSIL 688
NDSQRQATKDAG I+GLNVLRIINEPTAAAIAYGLD+ GE NVLIFDLGGGTFDVS+L
Sbjct: 149 NDSQRQATKDAGLIAGLNVLRIINEPTAAAIAYGLDRSNQGESNVLIFDLGGGTFDVSLL 208
Query: 689 TIEDGIFEVKSTAGDTHLG 745
TIE+GIFEVK+TAGDTHLG
Sbjct: 209 TIEEGIFEVKATAGDTHLG 227
Score = 138 bits (335), Expect = 6e-34
Identities = 63/87 (72%), Positives = 73/87 (83%)
Frame = +3
Query: 246 PQQTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSSM 425
P TIFDAKRLIGRKF+D VQ+DMKHWPF+V+S GKP ++V YKGE KTF PEE+SSM
Sbjct: 61 PHNTIFDAKRLIGRKFDDPEVQSDMKHWPFKVISKDGKPVLQVEYKGETKTFTPEEISSM 120
Query: 426 VLTKMKETAEAYLGKTVQNAVITVPAY 506
VL KM+ETAEAYLG V +AV+TVPAY
Sbjct: 121 VLMKMRETAEAYLGGKVTDAVVTVPAY 147
Score = 112 bits (270), Expect = 4e-26
Identities = 51/59 (86%), Positives = 56/59 (94%)
Frame = +1
Query: 76 AVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPN 252
++GIDLGTTYSCVG F + +VEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP+
Sbjct: 4 SIGIDLGTTYSCVGHFSNNRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPH 62
>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 644
Score = 142 bits (345), Expect = 4e-35
Identities = 68/79 (86%), Positives = 73/79 (92%)
Frame = +2
Query: 509 NDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGERNVLIFDLGGGTFDVSIL 688
NDSQRQATKDAG I+GLNVLRIINEPTAAAIAYGLD+ E NVLIFDLGGGTFDVS+L
Sbjct: 149 NDSQRQATKDAGLIAGLNVLRIINEPTAAAIAYGLDRSNQHETNVLIFDLGGGTFDVSLL 208
Query: 689 TIEDGIFEVKSTAGDTHLG 745
TIE+GIFEVK+TAGDTHLG
Sbjct: 209 TIEEGIFEVKATAGDTHLG 227
Score = 131 bits (316), Expect = 1e-31
Identities = 59/87 (67%), Positives = 71/87 (81%)
Frame = +3
Query: 246 PQQTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSSM 425
P TIFDAKRLIGR+F D VQ+DMKHWPF+V+ GKP I+V +KGE KTF PEE+SSM
Sbjct: 61 PHNTIFDAKRLIGRRFNDPEVQSDMKHWPFKVIEKDGKPLIQVEFKGETKTFTPEEISSM 120
Query: 426 VLTKMKETAEAYLGKTVQNAVITVPAY 506
VL KM+E+AEA+LG V +AV+TVPAY
Sbjct: 121 VLLKMRESAEAFLGGKVTDAVVTVPAY 147
Score = 112 bits (270), Expect = 4e-26
Identities = 51/59 (86%), Positives = 56/59 (94%)
Frame = +1
Query: 76 AVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPN 252
++GIDLGTTYSCVG F + +VEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP+
Sbjct: 4 SIGIDLGTTYSCVGHFSNNRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPH 62
>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
1|||Manual
Length = 663
Score = 130 bits (314), Expect = 2e-31
Identities = 58/79 (73%), Positives = 75/79 (94%)
Frame = +2
Query: 509 NDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGERNVLIFDLGGGTFDVSIL 688
ND+QRQATKDAGTI+GLNV+RI+NEPTAAAIAYGLDK T E++++++DLGGGTFDVS+L
Sbjct: 182 NDAQRQATKDAGTIAGLNVIRIVNEPTAAAIAYGLDKTDT-EKHIVVYDLGGGTFDVSLL 240
Query: 689 TIEDGIFEVKSTAGDTHLG 745
+I++G+FEV +T+GDTHLG
Sbjct: 241 SIDNGVFEVLATSGDTHLG 259
Score = 113 bits (273), Expect = 2e-26
Identities = 50/87 (57%), Positives = 69/87 (79%)
Frame = +3
Query: 246 PQQTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSSM 425
P+ TIFD KRLIGRKF++ T+ D+K +PF +V+D +P ++V G+ K F PEE+S+M
Sbjct: 94 PENTIFDIKRLIGRKFDEKTMAKDIKSFPFHIVNDKNRPLVEVNVGGKKKKFTPEEISAM 153
Query: 426 VLTKMKETAEAYLGKTVQNAVITVPAY 506
+L+KMK+TAEAYLGK V +AV+TVPAY
Sbjct: 154 ILSKMKQTAEAYLGKPVTHAVVTVPAY 180
Score = 98.3 bits (234), Expect = 1e-21
Identities = 43/57 (75%), Positives = 50/57 (87%)
Frame = +1
Query: 79 VGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP 249
+GIDLGTTYSCV V ++G+VEIIANDQGNR TPSYVAFT+ ERL+G+AAKNQ NP
Sbjct: 38 IGIDLGTTYSCVAVMKNGRVEIIANDQGNRITPSYVAFTEDERLVGEAAKNQAPSNP 94
>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 130 bits (314), Expect = 2e-31
Identities = 62/79 (78%), Positives = 69/79 (87%)
Frame = +2
Query: 509 NDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGERNVLIFDLGGGTFDVSIL 688
+DSQR ATKDAG I+GLNVLRIINEPTAAAIAYGLD K +NVLIFDLGGGTFDVS+L
Sbjct: 153 SDSQRAATKDAGAIAGLNVLRIINEPTAAAIAYGLDAKSDKPKNVLIFDLGGGTFDVSLL 212
Query: 689 TIEDGIFEVKSTAGDTHLG 745
I+ G+FEV +TAGDTHLG
Sbjct: 213 KIQGGVFEVLATAGDTHLG 231
Score = 118 bits (283), Expect = 1e-27
Identities = 53/87 (60%), Positives = 67/87 (77%)
Frame = +3
Query: 246 PQQTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSSM 425
P+ T+FDAKRLIGR++ED Q D+KHWPF+V+ + G P I+V Y GE K F +E+S+M
Sbjct: 65 PRNTVFDAKRLIGRRYEDPETQKDIKHWPFKVIDNNGIPTIEVNYLGEKKQFTAQEISAM 124
Query: 426 VLTKMKETAEAYLGKTVQNAVITVPAY 506
VLTKMKE +EA L K V+ AVITVPAY
Sbjct: 125 VLTKMKEISEAKLNKRVEKAVITVPAY 151
Score = 100 bits (239), Expect = 3e-22
Identities = 45/58 (77%), Positives = 51/58 (87%)
Frame = +1
Query: 76 AVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP 249
A+GIDLGTTYSCV V++ VEII NDQG RTTPS+VAFT+TERL+GDAAKNQ AMNP
Sbjct: 8 AIGIDLGTTYSCVAVWETANVEIIPNDQGARTTPSFVAFTETERLVGDAAKNQAAMNP 65
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 122 bits (294), Expect = 5e-29
Identities = 57/79 (72%), Positives = 68/79 (86%)
Frame = +2
Query: 509 NDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGERNVLIFDLGGGTFDVSIL 688
NDSQRQATK AG I+GLNVLR++NEPTAAA+AYGLDKK + V +FDLGGGTFD+SIL
Sbjct: 195 NDSQRQATKAAGAIAGLNVLRVVNEPTAAALAYGLDKK--NDAIVAVFDLGGGTFDISIL 252
Query: 689 TIEDGIFEVKSTAGDTHLG 745
+ +G+FEV+ST GDTHLG
Sbjct: 253 ELNNGVFEVRSTNGDTHLG 271
Score = 82.6 bits (195), Expect = 5e-17
Identities = 38/87 (43%), Positives = 55/87 (63%)
Frame = +3
Query: 246 PQQTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSSM 425
P+ T F KRLIGR+F++ VQ D+K P+++V + KT+ P ++
Sbjct: 110 PENTFFATKRLIGRRFKEPEVQRDIKEVPYKIVEHSNGD---AWLEARGKTYSPSQIGGF 166
Query: 426 VLTKMKETAEAYLGKTVQNAVITVPAY 506
+L+KM+ETA YLGK V+NAV+TVPAY
Sbjct: 167 ILSKMRETASTYLGKDVKNAVVTVPAY 193
Score = 73.7 bits (173), Expect = 2e-14
Identities = 34/66 (51%), Positives = 45/66 (68%), Gaps = 1/66 (1%)
Frame = +1
Query: 67 KAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVAM 243
K P +GIDLGTT SC+ + + ++IAN +G RTTPS VAFT D ERL+G +AK Q +
Sbjct: 49 KGPVIGIDLGTTTSCLAIMEGQTPKVIANAEGTRTTPSVVAFTKDGERLVGVSAKRQAVI 108
Query: 244 NPNKQY 261
NP +
Sbjct: 109 NPENTF 114
>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
Pss1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 63.7 bits (148), Expect = 3e-11
Identities = 35/82 (42%), Positives = 47/82 (57%), Gaps = 4/82 (4%)
Frame = +2
Query: 512 DSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGE----RNVLIFDLGGGTFDV 679
D QR+A +A I+GLN LR++N+ AAA+ YG+ K E R V I D G + V
Sbjct: 154 DIQRRALLEAANIAGLNPLRLMNDNAAAALTYGITKTDLPEPESPRRVAIVDFGHSNYSV 213
Query: 680 SILTIEDGIFEVKSTAGDTHLG 745
SI+ G F +KST D +LG
Sbjct: 214 SIVEFSRGQFHIKSTVCDRNLG 235
Score = 51.2 bits (117), Expect = 2e-07
Identities = 21/61 (34%), Positives = 39/61 (63%)
Frame = +1
Query: 64 AKAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAM 243
++ VGID G + + + V ++ +++I N+ NR+TPS V++ + R +G+AAK+ A
Sbjct: 3 SRTNVVGIDFGNSKTVIAVARNRAIDVIVNEVSNRSTPSLVSYGERSRFLGEAAKSAEAS 62
Query: 244 N 246
N
Sbjct: 63 N 63
Score = 41.1 bits (92), Expect = 2e-04
Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Frame = +3
Query: 249 QQTIFDAKRLIGRKFEDATVQ-ADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSSM 425
+ T+ KRL GR ++D ++ + ++ G KV Y E+ F ++ +
Sbjct: 65 RNTVGSLKRLAGRTYDDPEIKDIESNFISAKLTEVDGFVGAKVQYLNEETAFSNIQLIAA 124
Query: 426 VLTKMKETAEAYLGKTVQNAVITVPAYLMTLK 521
TK+K AEA L +V + VI++PA+ ++
Sbjct: 125 YFTKIKAIAEAELIGSVSDVVISIPAWFTDIQ 156
>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 566
Score = 41.5 bits (93), Expect = 1e-04
Identities = 17/56 (30%), Positives = 31/56 (55%)
Frame = +1
Query: 79 VGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMN 246
+GI G S + + GK +++AN++GNR PS +++ + G A+ Q+ N
Sbjct: 27 IGISFGNQNSSIAFNRDGKTDVLANEEGNRQIPSILSYHGDQEYHGVQARGQLVRN 82
Score = 30.7 bits (66), Expect = 0.23
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +3
Query: 387 EDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPAYLMTLKDK 527
++K E S L ++ E+AE +LG V V++VP Y + K
Sbjct: 134 KEKILTAHEASVRHLRRLTESAEDFLGTKVNGCVMSVPVYFTDAQRK 180
>SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 848
Score = 29.9 bits (64), Expect = 0.40
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = +1
Query: 79 VGIDLGTTYSCVGVFQHG-KVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNK 255
+ ID GT ++ + + G +EI+ R S VAF ER+ G A N P
Sbjct: 25 LAIDYGTEWTKAALIKPGIPLEIVLTKDTRRKEQSAVAFKGNERIFGVDASNLATRFP-- 82
Query: 256 QYSMPNV 276
+S+ NV
Sbjct: 83 AHSIRNV 89
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 29.1 bits (62), Expect = 0.70
Identities = 32/154 (20%), Positives = 64/154 (41%), Gaps = 11/154 (7%)
Frame = -3
Query: 667 TAAEVKDKYISFSSTLFVKTVSNRSSSRFIDDSENVQARDGTCIFCGLSLRVIKYAGTVI 488
+++ + + S SS L T S S+S I S + F S + I
Sbjct: 565 SSSSIPSTFSSVSSILSSSTSSPSSTSLSISSSST------SSTFSSASTSSPSSISSSI 618
Query: 487 TAFCTVLPR*ASAVSFIFVSTMELTSSGKKVLSSPL-----------YATLILGLPPSLT 341
++ T+L + S + +S+ + S +LSS + Y++ ++ +L
Sbjct: 619 SSSSTILSSPTPSTSSLMISSSSIISGSSSILSSSISTIPISSSLSTYSSSVIPSSSTLV 678
Query: 340 TSKGQCFMSACTVASSNLRPMRRLASNIVCWGSS 239
+S +S+ VASS+ P+ +S + + +S
Sbjct: 679 SSSSSLIVSSSPVASSSSSPIPSSSSLVSTYSAS 712
>SPAC25B8.04c |||mitochondrial splicing suppressor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 378
Score = 28.7 bits (61), Expect = 0.93
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +2
Query: 71 HPQ*ESIWVPRTLALVSSSTGRWRSSPTTRAT 166
HP S W+P LVS+ W +SP+++ T
Sbjct: 283 HPLYSSSWIPTLHDLVSTRCSVWLTSPSSQRT 314
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 27.9 bits (59), Expect = 1.6
Identities = 31/145 (21%), Positives = 64/145 (44%), Gaps = 1/145 (0%)
Frame = -3
Query: 667 TAAEVKDKYISFSSTLFVKTVSNRSSSRFIDDSENVQARDGTCIFCGLSLRVIKYAGTVI 488
T++ V + +S+ V T + +SS ++ S + + ++ + + T I
Sbjct: 3241 TSSSVLNSSTPITSSTVVNTSTPITSSSVLNSSTPITSSTVVNTSTPITSSTVVNSSTPI 3300
Query: 487 TAFCTVLPR*ASAVSFIFVSTMELTSSGKKVLSSPLYATLILGLPPSLTTSKGQCFMSAC 308
T+ T+ S + S+ +TSS S+P+ ++ +L ++T+S S+
Sbjct: 3301 TSSTTLNTSTPITSSSVLNSSTAITSSTALNTSTPITSSSVLNSSTAITSS--SILNSST 3358
Query: 307 TVASSN-LRPMRRLASNIVCWGSSP 236
V SS+ L + S+ V S+P
Sbjct: 3359 PVTSSSVLNSSTPITSSTVVNSSTP 3383
Score = 26.2 bits (55), Expect = 5.0
Identities = 30/144 (20%), Positives = 62/144 (43%)
Frame = -3
Query: 667 TAAEVKDKYISFSSTLFVKTVSNRSSSRFIDDSENVQARDGTCIFCGLSLRVIKYAGTVI 488
T++ V + +S+ V + + +SS ++ S + + ++ + + T I
Sbjct: 829 TSSTVVNTSTPITSSTVVNSSTPITSSSVLNSSTPITSSTALNTSTPITSSSVLNSSTPI 888
Query: 487 TAFCTVLPR*ASAVSFIFVSTMELTSSGKKVLSSPLYATLILGLPPSLTTSKGQCFMSAC 308
T+ V S + S+ +TSS S+P+ ++ +L +T+S G +
Sbjct: 889 TSSTVVNTSTPITSSTVVNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTGLNTSTPI 948
Query: 307 TVASSNLRPMRRLASNIVCWGSSP 236
T +SS L + S+ V S+P
Sbjct: 949 T-SSSVLNSSTPITSSTVLNSSTP 971
>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2244
Score = 26.6 bits (56), Expect = 3.8
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +1
Query: 175 PSYVAFTDTERLIGDAAKNQVAMNPNKQYSMPNVSSDVSSKMLLC 309
P +A T ER++ AAK A+N Y++ ++ D K++ C
Sbjct: 1252 PQDLAPTTIERIVDAAAKIGEALNITGPYNIQFIAKDNEIKVIEC 1296
>SPAC2F7.03c |pom1||DYRK family protein kinase
Pom1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1087
Score = 25.4 bits (53), Expect = 8.7
Identities = 17/66 (25%), Positives = 31/66 (46%)
Frame = +3
Query: 57 QNGKSTRSRNRSGYHVLLRWCLPAREGGDHRQRPGQQDHSVLCCVHRHRASHRRCRQEPG 236
+NGK T +R +S + W P++E R G D + V R + + +EP
Sbjct: 477 RNGKKTPTRTKSRMQQFINWFKPSKE----RSSNGNSDSASPPPVPRLSITRSQVSREP- 531
Query: 237 GDEPQQ 254
++P++
Sbjct: 532 -EKPEE 536
>SPAC823.11 |||sphingosine-1-phosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 411
Score = 25.4 bits (53), Expect = 8.7
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = -3
Query: 157 GRWR*SPPSRAGRHQRKSTWYPDRFLLRVLLPFCI 53
G W SP S + H ++++ +F +RVL C+
Sbjct: 276 GTWFASPESLSHLHDNLNSYFLLKFFVRVLFGVCM 310
>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 675
Score = 25.4 bits (53), Expect = 8.7
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +1
Query: 220 AAKNQVAMNPNKQYSMPNVSSDVSSKML 303
A K Q+ +NP + +PNV D + +L
Sbjct: 323 ARKRQIQLNPFPPWDVPNVLEDQMNSLL 350
>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 638
Score = 25.4 bits (53), Expect = 8.7
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +3
Query: 663 AVPSTCPSLPSRMVSSR*NPPPATPTW 743
++PST P++PS +S + PP T ++
Sbjct: 299 SIPSTIPTIPSAYSASVSSQPPLTHSY 325
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,298,633
Number of Sequences: 5004
Number of extensions: 71415
Number of successful extensions: 287
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 236
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 282
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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