Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00065
         (767 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po...    30   0.32 
SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyce...    27   2.2  
SPAC9G1.12 |cpd1||tRNA |Schizosaccharomyces pombe|chr 1|||Manual       27   2.2  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    26   6.8  
SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyc...    26   6.8  

>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 507

 Score = 30.3 bits (65), Expect = 0.32
 Identities = 18/42 (42%), Positives = 23/42 (54%)
 Frame = +1

Query: 142 SPILLDDSPDTLTENTPKSVTAAES*EENSRTSTHVTSSDSG 267
           S I+    PD+ +E+TP S + A S    S TST  TS  SG
Sbjct: 223 SSIISAAPPDSASESTPASTSYASS--TTSATSTSTTSGSSG 262


>SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
 Frame = +3

Query: 75  LTSCDVSHLETTTPDPPPKPYV---FSYTAGRFPGHVDREHTE 194
           L S  V  L   +PDPP  P +    S      P HV R++T+
Sbjct: 444 LPSASVPALGDGSPDPPAAPSIQNSLSVHESEMPPHVTRDYTQ 486


>SPAC9G1.12 |cpd1||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 364

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
 Frame = +3

Query: 60  VLAAGLTSCDVSHLETTTPDPPPKPYVFSYTAGRFPGHVD--REHTEVSDGSG 212
           V+ AG  S  +SH  + T  P  + + F Y A R+   +   REH  + D  G
Sbjct: 107 VIEAGTGSASMSHAISRTVGPLGRLFTFEYHATRYQTALQEFREHEMLIDVGG 159


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 2685

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = +2

Query: 302  LSDVPPEHP--ADSESVALAKDRHFQLYSKIAEEHAQHPHP 418
            L  +  EH   AD ES+ +A+D +  +   +AEE+ +   P
Sbjct: 2561 LQQLSAEHNRHADLESMVMARDDYINVQQPLAEENQEEGSP 2601


>SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 735

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +2

Query: 371 QLYSKIAEEHAQHPHPYETSVPRQSAAVAEATLKHSEL 484
           +L+ + A   A+HP  Y+T V   SA  AE+T  H  L
Sbjct: 176 RLFIQSAHNIAKHPSLYDTEVRNPSA--AESTNSHVSL 211


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,721,613
Number of Sequences: 5004
Number of extensions: 50322
Number of successful extensions: 171
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)