Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00065
(767 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_17098| Best HMM Match : WD40 (HMM E-Value=8.9e-32) 30 1.8
SB_15168| Best HMM Match : Keratin_B2 (HMM E-Value=1.9) 30 1.8
SB_32176| Best HMM Match : Keratin_B2 (HMM E-Value=0.53) 30 2.4
SB_20574| Best HMM Match : Extensin_2 (HMM E-Value=0.25) 30 2.4
SB_12027| Best HMM Match : Extensin_2 (HMM E-Value=0.2) 30 2.4
SB_8524| Best HMM Match : Keratin_B2 (HMM E-Value=0.53) 30 2.4
SB_55244| Best HMM Match : YTV (HMM E-Value=2.8) 29 3.1
SB_16827| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_12976| Best HMM Match : MAM (HMM E-Value=1.10002e-41) 29 4.1
SB_12493| Best HMM Match : RrnaAD (HMM E-Value=4.6) 29 4.1
SB_52940| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.5
SB_14419| Best HMM Match : E1-E2_ATPase (HMM E-Value=0) 28 7.2
SB_12466| Best HMM Match : Transferrin (HMM E-Value=4.4e-21) 28 7.2
SB_59548| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
>SB_17098| Best HMM Match : WD40 (HMM E-Value=8.9e-32)
Length = 808
Score = 30.3 bits (65), Expect = 1.8
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Frame = -3
Query: 462 ASATAAD*RGTLVS*GCGCWACSSAILEYSWKCLSLAKATDSESAGCSGGTSLSIGWKPS 283
+SA A R T+ + C++ + A + + KC S+ +AT + + C G T ++ K
Sbjct: 502 SSARTAMTRATVAT-NTKCYSVTRATVATNTKCYSVTRATVATNTKCYGVTRATVATKTK 560
Query: 282 -LSAT*STVRT 253
S T +TV T
Sbjct: 561 CYSVTRATVAT 571
Score = 29.5 bits (63), Expect = 3.1
Identities = 26/96 (27%), Positives = 46/96 (47%), Gaps = 12/96 (12%)
Frame = -3
Query: 504 CSAITRKS----SECFKVASATAAD*-------RGTLVS*GCGCWACSSAILEYSWKCLS 358
C ++TR + ++C+ V AT A R T+ + C++ + A + + KC S
Sbjct: 519 CYSVTRATVATNTKCYSVTRATVATNTKCYGVTRATVAT-KTKCYSVTRATVATNTKCYS 577
Query: 357 LAKATDSESAGCSGGTSLSIGWKPS-LSAT*STVRT 253
+ +AT + + C G T ++ SAT +TV T
Sbjct: 578 VTRATVATNTKCYGVTRATVATNTKCYSATYATVAT 613
Score = 28.3 bits (60), Expect = 7.2
Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 5/89 (5%)
Frame = -3
Query: 504 CSAITRKS----SECFKVASATAAD*RGTLVS*GCGCWACSSAILEYSWKCLSLAKATDS 337
C +TR + ++C+ V AT A C++ + A + + KC + +AT +
Sbjct: 631 CYGVTRATVATNTKCYGVTRATVAT--------NTKCYSVTRATVATNTKCYGVTRATVA 682
Query: 336 ESAGCSGGTSLSIGWKPS-LSAT*STVRT 253
+ C G T ++ K S T +TV T
Sbjct: 683 TNTKCYGVTRATVATKTKCYSVTRATVAT 711
>SB_15168| Best HMM Match : Keratin_B2 (HMM E-Value=1.9)
Length = 303
Score = 30.3 bits (65), Expect = 1.8
Identities = 26/96 (27%), Positives = 46/96 (47%), Gaps = 12/96 (12%)
Frame = -3
Query: 504 CSAITRKS----SECFKVASATAAD*-------RGTLVS*GCGCWACSSAILEYSWKCLS 358
C ++TR + ++C+ V AT A R T+ + C++ + A + + KC S
Sbjct: 12 CYSVTRATVATNTKCYSVTRATVATNTKCYGVTRATVAT-NTKCYSVTRATVATNTKCYS 70
Query: 357 LAKATDSESAGCSGGTSLSIGWKPS-LSAT*STVRT 253
+ +AT + + C G T ++ SAT +TV T
Sbjct: 71 VTRATVATNTKCYGVTRATVATNTKCYSATYATVAT 106
Score = 28.3 bits (60), Expect = 7.2
Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 5/89 (5%)
Frame = -3
Query: 504 CSAITRKS----SECFKVASATAAD*RGTLVS*GCGCWACSSAILEYSWKCLSLAKATDS 337
C +TR + ++C+ V AT A C++ + A + + KC + +AT +
Sbjct: 124 CYGVTRATVATNTKCYGVTRATVAT--------NTKCYSVTRATVATNTKCYGVTRATVA 175
Query: 336 ESAGCSGGTSLSIGWKPS-LSAT*STVRT 253
+ C G T ++ K S T +TV T
Sbjct: 176 TNTKCYGVTRATVATKTKCYSVTRATVAT 204
>SB_32176| Best HMM Match : Keratin_B2 (HMM E-Value=0.53)
Length = 194
Score = 29.9 bits (64), Expect = 2.4
Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Frame = -3
Query: 498 AITRKSSECFKVASATAAD*RGTLVS*GCGCWACSSAILEYSWKCLSLAKATDSESAGCS 319
A +++C+ V AT A C++ + A + + KC S +AT + + C
Sbjct: 73 ATVATNTKCYSVTCATVAT--------NTKCYSATRATVATNTKCYSATRATVATNTKCY 124
Query: 318 GGTSLSIGWK-PSLSAT*STVRT 253
T ++ S SAT +TV T
Sbjct: 125 SATRATVATNTKSYSATRATVAT 147
>SB_20574| Best HMM Match : Extensin_2 (HMM E-Value=0.25)
Length = 1508
Score = 29.9 bits (64), Expect = 2.4
Identities = 18/56 (32%), Positives = 27/56 (48%)
Frame = +1
Query: 160 DSPDTLTENTPKSVTAAES*EENSRTSTHVTSSDSGLRG*QGRLPSDTERRASRAP 327
DS + ++ +S + AES E R +T + S G+RG R S E R +P
Sbjct: 983 DSKRSSVKDKSQSPSKAESSERTPRKTTEKSPSGKGVRGKDERKDSPKEARKKTSP 1038
>SB_12027| Best HMM Match : Extensin_2 (HMM E-Value=0.2)
Length = 1706
Score = 29.9 bits (64), Expect = 2.4
Identities = 18/56 (32%), Positives = 27/56 (48%)
Frame = +1
Query: 160 DSPDTLTENTPKSVTAAES*EENSRTSTHVTSSDSGLRG*QGRLPSDTERRASRAP 327
DS + ++ +S + AES E R +T + S G+RG R S E R +P
Sbjct: 342 DSKRSSVKDKSQSPSKAESSERTPRKTTEKSPSGKGVRGKDERKDSPKEARKKTSP 397
>SB_8524| Best HMM Match : Keratin_B2 (HMM E-Value=0.53)
Length = 194
Score = 29.9 bits (64), Expect = 2.4
Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Frame = -3
Query: 498 AITRKSSECFKVASATAAD*RGTLVS*GCGCWACSSAILEYSWKCLSLAKATDSESAGCS 319
A +++C+ V AT A C++ + A + + KC S +AT + + C
Sbjct: 73 ATVATNTKCYSVTCATVAT--------NTKCYSATRATVATNTKCYSATRATVATNTKCY 124
Query: 318 GGTSLSIGWK-PSLSAT*STVRT 253
T ++ S SAT +TV T
Sbjct: 125 SATRATVATNTKSYSATRATVAT 147
>SB_55244| Best HMM Match : YTV (HMM E-Value=2.8)
Length = 221
Score = 29.5 bits (63), Expect = 3.1
Identities = 26/96 (27%), Positives = 46/96 (47%), Gaps = 12/96 (12%)
Frame = -3
Query: 504 CSAITRKS----SECFKVASATAAD*-------RGTLVS*GCGCWACSSAILEYSWKCLS 358
C ++TR + ++C+ V AT A R T+ + C++ + A + + KC S
Sbjct: 12 CYSVTRATVATNTKCYSVTRATVATNTKCYGVTRATVAT-KTKCYSVTRATVATNTKCYS 70
Query: 357 LAKATDSESAGCSGGTSLSIGWKPS-LSAT*STVRT 253
+ +AT + + C G T ++ SAT +TV T
Sbjct: 71 VTRATVATNTKCYGVTRATVATNTKCYSATYATVAT 106
Score = 28.3 bits (60), Expect = 7.2
Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 5/89 (5%)
Frame = -3
Query: 504 CSAITRKS----SECFKVASATAAD*RGTLVS*GCGCWACSSAILEYSWKCLSLAKATDS 337
C +TR + ++C+ V AT A C++ + A + + KC + +AT +
Sbjct: 124 CYGVTRATVATNTKCYGVTRATVAT--------NTKCYSVTRATVATNTKCYGVTRATVA 175
Query: 336 ESAGCSGGTSLSIGWKPS-LSAT*STVRT 253
+ C G T ++ K S T +TV T
Sbjct: 176 TNTKCYGVTRATVATKTKCYSVTRATVAT 204
>SB_16827| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 133
Score = 29.5 bits (63), Expect = 3.1
Identities = 18/62 (29%), Positives = 30/62 (48%)
Frame = -1
Query: 386 SWSIAGSACL*PRLRIQSQPGALEARRSVSDGSLPCQPRSPLSELVTWVDVREFSSHDSA 207
SW + G ACL +R + QP L+ +R S SL + R + + T V + H ++
Sbjct: 31 SWILVGLACLLQEVRRKPQP--LKDKRIYSRSSLSDRSRKRPAPITTTVTNHRLNCHTNS 88
Query: 206 AV 201
+
Sbjct: 89 VI 90
>SB_12976| Best HMM Match : MAM (HMM E-Value=1.10002e-41)
Length = 367
Score = 29.1 bits (62), Expect = 4.1
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +3
Query: 78 TSCDVSHLETTT-PDPPPKPYVFSYTAGRFPGH 173
TS + L TT P PPP Y+++ +GR PG+
Sbjct: 200 TSAPPTTLATTAVPSPPPGFYLYTEASGRKPGN 232
>SB_12493| Best HMM Match : RrnaAD (HMM E-Value=4.6)
Length = 984
Score = 29.1 bits (62), Expect = 4.1
Identities = 17/48 (35%), Positives = 27/48 (56%)
Frame = +2
Query: 350 LAKDRHFQLYSKIAEEHAQHPHPYETSVPRQSAAVAEATLKHSELFRV 493
LAKD + + AEEHAQ ++ R + AV ++LK +++ RV
Sbjct: 125 LAKDDRYSTRTP-AEEHAQGGSIFDAYAGRGACAVVRSSLKTTDIRRV 171
Score = 29.1 bits (62), Expect = 4.1
Identities = 16/48 (33%), Positives = 28/48 (58%)
Frame = +2
Query: 350 LAKDRHFQLYSKIAEEHAQHPHPYETSVPRQSAAVAEATLKHSELFRV 493
LAKD + ++ +AEEHAQ ++ R + +V ++LK ++ RV
Sbjct: 405 LAKDDRYSTHT-LAEEHAQLRSKFDAYSGRGACSVVRSSLKTIDIRRV 451
>SB_52940| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 172
Score = 28.7 bits (61), Expect = 5.5
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +3
Query: 123 PPKPYVFSYTAG-RFPGHVDREHTEVSDGSGVVRGK 227
P KP +YT G ++ G++ EVSD S RGK
Sbjct: 33 PEKPQYINYTPGHQYSGYMYGAEYEVSDRSPFTRGK 68
>SB_14419| Best HMM Match : E1-E2_ATPase (HMM E-Value=0)
Length = 543
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +2
Query: 251 QVRTVDYVADKEGFHPILSDVPPEHPADSESVAL 352
Q++ + K+ HP+ S+ PPE P+DS AL
Sbjct: 17 QLQDMQEAHGKQASHPVSSE-PPEEPSDSTKKAL 49
>SB_12466| Best HMM Match : Transferrin (HMM E-Value=4.4e-21)
Length = 291
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = -2
Query: 232 ANFPLTTPLPSLTSVCSLSTCPGN 161
AN T LPSL CS TCPG+
Sbjct: 187 ANNLNNTKLPSLCGACSNPTCPGD 210
>SB_59548| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2835
Score = 27.9 bits (59), Expect = 9.5
Identities = 9/31 (29%), Positives = 19/31 (61%)
Frame = -1
Query: 317 EARRSVSDGSLPCQPRSPLSELVTWVDVREF 225
+ +SV+ GS+ C RSP+ + W+++ +
Sbjct: 651 DGSKSVAYGSVACTSRSPVYNISKWMNIHSY 681
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,356,518
Number of Sequences: 59808
Number of extensions: 414583
Number of successful extensions: 1506
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1304
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1491
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2083999566
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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