Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00065
         (767 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL834382-1|CAD39045.1|  505|Homo sapiens hypothetical protein pr...    32   2.0  
X96753-1|CAA65529.1| 2322|Homo sapiens melanoma-associated chond...    31   6.0  
AY359468-1|AAQ62842.1| 2322|Homo sapiens melanoma chondroitin su...    31   6.0  
AY766461-1|AAX07296.1|   87|Homo sapiens CC chemokine ligand 4L2...    30   7.9  
AY766450-1|AAX07309.1|   87|Homo sapiens CC chemokine ligand 4L2...    30   7.9  

>AL834382-1|CAD39045.1|  505|Homo sapiens hypothetical protein
           protein.
          Length = 505

 Score = 32.3 bits (70), Expect = 2.0
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = -3

Query: 399 CSSAILEYSWKCLSLAKATDSESAGCSGGTSLSIGW 292
           C+S +L+ +W+C S    T + SA CSG T  +  W
Sbjct: 332 CTSRMLKLTWRCASCRTFTPTFSA-CSGATVYAASW 366


>X96753-1|CAA65529.1| 2322|Homo sapiens melanoma-associated
           chondroitin sulfate proteoglycan (MCSP) protein.
          Length = 2322

 Score = 30.7 bits (66), Expect = 6.0
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = +3

Query: 93  SHLETTTPDPPPKPYVFSYTAGRFP--GHVDREHTEVSDGSG 212
           +HLE T  +  P P  F Y   + P  G++  + T +SDG G
Sbjct: 805 AHLEATLEEAGPSPPTFHYEVVQAPRKGNLQLQGTRLSDGQG 846


>AY359468-1|AAQ62842.1| 2322|Homo sapiens melanoma chondroitin
           sulfate proteoglycan protein.
          Length = 2322

 Score = 30.7 bits (66), Expect = 6.0
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = +3

Query: 93  SHLETTTPDPPPKPYVFSYTAGRFP--GHVDREHTEVSDGSG 212
           +HLE T  +  P P  F Y   + P  G++  + T +SDG G
Sbjct: 805 AHLEATLEEAGPSPPTFHYEVVQAPRKGNLQLQGTRLSDGQG 846


>AY766461-1|AAX07296.1|   87|Homo sapiens CC chemokine ligand 4L2
           protein.
          Length = 87

 Score = 30.3 bits (65), Expect = 7.9
 Identities = 23/77 (29%), Positives = 31/77 (40%), Gaps = 2/77 (2%)
 Frame = +3

Query: 39  LCHTLILVLAAGLTSCDVSHLETTTPDPPPKPYVFSYTAGRFPGH--VDREHTEVSDGSG 212
           LC T++ +L      C ++ L       PP    FSYTA + P +  VD   T       
Sbjct: 3   LCVTVLSLLVLVAAFCSLA-LSAPMGSDPPTACCFSYTARKLPRNFVVDYYETSSLCSQP 61

Query: 213 VVRGKFAYVDPRHKFGQ 263
            V GK    DP   + Q
Sbjct: 62  AVVGKQVCADPSESWVQ 78


>AY766450-1|AAX07309.1|   87|Homo sapiens CC chemokine ligand 4L2
           protein.
          Length = 87

 Score = 30.3 bits (65), Expect = 7.9
 Identities = 23/77 (29%), Positives = 31/77 (40%), Gaps = 2/77 (2%)
 Frame = +3

Query: 39  LCHTLILVLAAGLTSCDVSHLETTTPDPPPKPYVFSYTAGRFPGH--VDREHTEVSDGSG 212
           LC T++ +L      C ++ L       PP    FSYTA + P +  VD   T       
Sbjct: 3   LCVTVLSLLVLVAAFCSLA-LSAPMGSDPPTACCFSYTARKLPRNFVVDYYETSSLCSQP 61

Query: 213 VVRGKFAYVDPRHKFGQ 263
            V GK    DP   + Q
Sbjct: 62  AVVGKQVCADPSESWVQ 78


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,874,249
Number of Sequences: 237096
Number of extensions: 1960543
Number of successful extensions: 9814
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9303
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9804
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9255747988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)