Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00065
         (767 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110485-29|CAB60376.3|  732|Caenorhabditis elegans Hypothetical...    33   0.30 
AF022970-4|AAB69898.1|  336|Caenorhabditis elegans Hypothetical ...    31   1.2  
U21320-5|AAA62536.2|  332|Caenorhabditis elegans Rnp (rrm rna bi...    29   3.6  
AF040661-11|AAG24210.1|  211|Caenorhabditis elegans Hypothetical...    29   4.8  
AC024817-27|AAY86296.1|  636|Caenorhabditis elegans Hypothetical...    28   6.4  
Z82064-2|CAI79180.1|  167|Caenorhabditis elegans Hypothetical pr...    28   8.4  

>AL110485-29|CAB60376.3|  732|Caenorhabditis elegans Hypothetical
           protein Y46G5A.10 protein.
          Length = 732

 Score = 32.7 bits (71), Expect = 0.30
 Identities = 17/49 (34%), Positives = 26/49 (53%)
 Frame = +1

Query: 112 RLTLHRSPTCSPILLDDSPDTLTENTPKSVTAAES*EENSRTSTHVTSS 258
           +L   RS T     +  SP ++T+N PK+ T+     EN +T  H T+S
Sbjct: 301 KLRPSRSDTILSRSVSTSPSSVTDNIPKTSTSRIPSSENPKTMEHTTTS 349


>AF022970-4|AAB69898.1|  336|Caenorhabditis elegans Hypothetical
           protein F13A2.3 protein.
          Length = 336

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = +1

Query: 112 RLTLHRSPTCSPILLDDSPDTLTENTPKSVTAAES*EENSRTSTHVT 252
           R   H +  C PI  D++P T   NTP + T  E+ E+     ++ T
Sbjct: 94  RAPRHINIKCEPISDDENPTTANSNTPTTPTTPENTEDPFEGPSYAT 140


>U21320-5|AAA62536.2|  332|Caenorhabditis elegans Rnp (rrm rna
           binding domain) containingprotein 7 protein.
          Length = 332

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 513 DRGGERGSPKGGRRETTPAGT 575
           DRGG+RG  +GG R +T  G+
Sbjct: 289 DRGGDRGGDRGGSRYSTGGGS 309


>AF040661-11|AAG24210.1|  211|Caenorhabditis elegans Hypothetical
           protein W10G11.15 protein.
          Length = 211

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -3

Query: 408 CWACSSAILEYSWKCLSLAKATDSESAGCSGG 313
           C A S+A    +WK +  ++A +SE  GC  G
Sbjct: 12  CLALSAADCPAAWKAILNSQAEESEDNGCEAG 43


>AC024817-27|AAY86296.1|  636|Caenorhabditis elegans Hypothetical
           protein Y54G2A.40 protein.
          Length = 636

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 19/56 (33%), Positives = 26/56 (46%)
 Frame = -2

Query: 337 RVSRVLWRHVAQYRMEAFLVSHVVHCPNL*RGSTYANFPLTTPLPSLTSVCSLSTC 170
           RV  +L +     RM+   + + V C N  R  TY  F  T   P + S C +STC
Sbjct: 316 RVQDLLDKSNKMSRMQLHKL-YTVFCWNYYRTDTYELFNETDRKPLICSQCKVSTC 370


>Z82064-2|CAI79180.1|  167|Caenorhabditis elegans Hypothetical
           protein W02B9.2 protein.
          Length = 167

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = +3

Query: 513 DRGGERGSPKGGRR 554
           DRGG+RG  +GGRR
Sbjct: 109 DRGGDRGGDRGGRR 122


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,454,221
Number of Sequences: 27780
Number of extensions: 303067
Number of successful extensions: 1132
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1015
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1130
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1840614650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)