Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00065
         (767 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g17950.1 68415.m02080 homeodomain transcription factor (WUSCH...    29   2.6  
At5g26717.1 68418.m03160 hypothetical protein                          29   4.5  
At2g35530.1 68415.m04352 bZIP transcription factor family protei...    25   6.9  
At4g24290.2 68417.m03488 expressed protein                             28   7.9  
At2g48160.1 68415.m06031 PWWP domain-containing protein                28   7.9  

>At2g17950.1 68415.m02080 homeodomain transcription factor (WUSCHEL)
           99.4% identical to WUSCHELL (GI:4090200) [Arabidopsis
           thaliana]
          Length = 292

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
 Frame = +2

Query: 242 PTSQVRTVDYVADKEGFHPILSD---VPPEHPADSESVALAKDRHFQLYSK 385
           P+S   +V  +A  + +HP+L     VP + PA+S +V L +D H   ++K
Sbjct: 109 PSSSPNSV-MMAANDHYHPLLHHHHGVPMQRPANSVNVKLNQDHHLYHHNK 158


>At5g26717.1 68418.m03160 hypothetical protein
          Length = 141

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 9/30 (30%), Positives = 21/30 (70%)
 Frame = +3

Query: 33  KMLCHTLILVLAAGLTSCDVSHLETTTPDP 122
           KM+    ++++A GL +C+ ++++ + PDP
Sbjct: 67  KMMMLMALIMMACGLQACNATNVDESKPDP 96


>At2g35530.1 68415.m04352 bZIP transcription factor family protein
           contains Pfam domain PF00170: bZIP transcription factor;
           similar to G-Box binding protein 2 (GI:5381313)
           [Catharanthus roseus].
          Length = 409

 Score = 25.4 bits (53), Expect(2) = 6.9
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 63  LAAGLTSCDVSHLETTTPDPPPKPYVFS 146
           ++AG+ + D S  +  +P PPP  YV S
Sbjct: 35  VSAGMATPDWSGFQAYSPMPPPHGYVAS 62



 Score = 21.0 bits (42), Expect(2) = 6.9
 Identities = 8/17 (47%), Positives = 8/17 (47%)
 Frame = +3

Query: 123 PPKPYVFSYTAGRFPGH 173
           PP PYV  Y  G    H
Sbjct: 83  PPHPYVAMYPPGGMYAH 99


>At4g24290.2 68417.m03488 expressed protein
          Length = 606

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 69  AGLTSCDVSHLETTTPDPPPKPYVFSYTAGRFPG 170
           +GL S  +SH  T    PPP+P   +  +  +PG
Sbjct: 504 SGLISTLISHHFTAAQKPPPRPADVNINSAIYPG 537


>At2g48160.1 68415.m06031 PWWP domain-containing protein
          Length = 1366

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +3

Query: 93   SHLETTTPDPPPKP-YVFSYTAGRFPGHVDREHTE 194
            SH     P PPP P + FS+   R PGHV + H +
Sbjct: 1230 SHPHPHPPPPPPPPQHQFSF---REPGHVLKSHRD 1261


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,587,986
Number of Sequences: 28952
Number of extensions: 283674
Number of successful extensions: 1060
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 929
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1057
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1721869952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)