Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00064
         (760 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g24280.1 68414.m03064 glucose-6-phosphate 1-dehydrogenase, pu...    29   3.4  
At1g12460.1 68414.m01440 leucine-rich repeat transmembrane prote...    28   7.7  

>At1g24280.1 68414.m03064 glucose-6-phosphate 1-dehydrogenase,
           putative / G6PD, putative strong similarity to SP|Q43839
           Glucose-6-phosphate 1-dehydrogenase, chloroplast
           precursor (EC 1.1.1.49) (G6PD) {Solanum tuberosum};
           contains Pfam profiles PF02781: Glucose-6-phosphate
           dehydrogenase C-terminal, PF00479: Glucose-6-phosphate
           dehydrogenase NAD binding domain
          Length = 599

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +3

Query: 111 SYHKNVTWLNRTQQLNSTSVHYSVNKRLTISELCVENKGKKNVNIS 248
           S H + + +N      S S HY+  + L ++ELCV    +++V  S
Sbjct: 21  SNHHHSSLINVVDPRRSLSFHYASPQGLNLAELCVVRSQRRSVQSS 66


>At1g12460.1 68414.m01440 leucine-rich repeat transmembrane protein
           kinase, putative
          Length = 882

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -3

Query: 680 SVQSNLLLLNIHSRLYKVELTILIILNNNTFHSI 579
           SV++NLL  ++   + K +  IL+ L +N FH +
Sbjct: 218 SVRNNLLSGDVSEEIQKCQRLILVDLGSNLFHGL 251


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,024,543
Number of Sequences: 28952
Number of extensions: 250783
Number of successful extensions: 503
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 503
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1692519896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)