Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00063
         (768 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    25   0.88 
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    25   0.88 
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    25   0.88 
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    25   0.88 
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    25   0.88 
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    25   0.88 
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           25   0.88 
AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax pr...    25   0.88 
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    25   0.88 
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    23   2.0  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    23   2.7  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    23   2.7  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    23   2.7  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       23   3.6  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    21   8.2  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   8.2  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    21   8.2  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    21   8.2  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    21   8.2  

>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 24.6 bits (51), Expect = 0.88
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -1

Query: 348 RVTPPMSMFSTASATVTSGL 289
           R TPP+S  S ++AT +SGL
Sbjct: 124 RSTPPLSTPSNSNATKSSGL 143


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 24.6 bits (51), Expect = 0.88
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -1

Query: 348 RVTPPMSMFSTASATVTSGL 289
           R TPP+S  S ++AT +SGL
Sbjct: 124 RSTPPLSTPSNSNATKSSGL 143


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 24.6 bits (51), Expect = 0.88
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -1

Query: 348 RVTPPMSMFSTASATVTSGL 289
           R TPP+S  S ++AT +SGL
Sbjct: 124 RSTPPLSTPSNSNATKSSGL 143


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 24.6 bits (51), Expect = 0.88
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -1

Query: 348 RVTPPMSMFSTASATVTSGL 289
           R TPP+S  S ++AT +SGL
Sbjct: 124 RSTPPLSTPSNSNATKSSGL 143


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 24.6 bits (51), Expect = 0.88
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -1

Query: 348 RVTPPMSMFSTASATVTSGL 289
           R TPP+S  S ++AT +SGL
Sbjct: 124 RSTPPLSTPSNSNATKSSGL 143


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 24.6 bits (51), Expect = 0.88
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -1

Query: 348 RVTPPMSMFSTASATVTSGL 289
           R TPP+S  S ++AT +SGL
Sbjct: 80  RSTPPLSTPSNSNATKSSGL 99


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 24.6 bits (51), Expect = 0.88
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -1

Query: 348 RVTPPMSMFSTASATVTSGL 289
           R TPP+S  S ++AT +SGL
Sbjct: 124 RSTPPLSTPSNSNATKSSGL 143


>AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax
           protein.
          Length = 157

 Score = 24.6 bits (51), Expect = 0.88
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -1

Query: 348 RVTPPMSMFSTASATVTSGL 289
           R TPP+S  S ++AT +SGL
Sbjct: 124 RSTPPLSTPSNSNATKSSGL 143


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 24.6 bits (51), Expect = 0.88
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -1

Query: 348 RVTPPMSMFSTASATVTSGL 289
           R TPP+S  S ++AT +SGL
Sbjct: 124 RSTPPLSTPSNSNATKSSGL 143


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = -3

Query: 130 GALVMSDTS*TVRPAFRSAVAVPPLAINCRPHSDRLFANESSP 2
           G +V   TS  V  A  ++    PLA  CR +   + A  SSP
Sbjct: 223 GRIVERFTSDRVHAALVTSPRARPLARTCRDNRLLVLAGTSSP 265


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 10/21 (47%), Positives = 17/21 (80%)
 Frame = +3

Query: 54  ASGGTATALRNAGLTVQDVSD 116
           +S  TATA+ +A +T+Q+VS+
Sbjct: 251 SSPTTATAIASATVTIQNVSN 271


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 10/21 (47%), Positives = 17/21 (80%)
 Frame = +3

Query: 54  ASGGTATALRNAGLTVQDVSD 116
           +S  TATA+ +A +T+Q+VS+
Sbjct: 199 SSPTTATAIASATVTIQNVSN 219


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 10/21 (47%), Positives = 17/21 (80%)
 Frame = +3

Query: 54  ASGGTATALRNAGLTVQDVSD 116
           +S  TATA+ +A +T+Q+VS+
Sbjct: 382 SSPTTATAIASATVTIQNVSN 402


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +2

Query: 218 HETSEVRDDKRGVCNLYPFV 277
           H    +R+DKR  C   PF+
Sbjct: 220 HSKVHIREDKRLTCPKCPFI 239


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 621 RDSLPITTLNGAPGFINLCDA 683
           R S P +T +G+PGF+    A
Sbjct: 71  RISSPSSTKSGSPGFLTYTKA 91


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 10/35 (28%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
 Frame = +3

Query: 459  GHKAEIS--PEGVHSYFGLDLAISDYFRKQYSPGQ 557
            GH A +   P  V+ YF  + +++ +  K   PG+
Sbjct: 2524 GHVAPLYYYPGDVYDYFNANFSLNYWIEKGADPGK 2558


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +3

Query: 513 LAISDYFRKQYSPGQAQLTLRYGM 584
           L I  Y +  Y P QA  T  YG+
Sbjct: 424 LGILRYAKGPYQPSQAPPTYDYGI 447


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +3

Query: 513 LAISDYFRKQYSPGQAQLTLRYGM 584
           L I  Y +  Y P QA  T  YG+
Sbjct: 424 LGILRYAKGPYQPSQAPPTYDYGI 447


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -1

Query: 336 PMSMFSTASATVTSGLDTVWTN 271
           P++  S ASA   S LD  W +
Sbjct: 359 PLTSLSLASAQTLSELDLSWNS 380


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,646
Number of Sequences: 336
Number of extensions: 3425
Number of successful extensions: 22
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20650031
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)